Gene omics information

Query gene ID At4g23810
Gene name WRKY53
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.6781.6At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.S.X.H.G.
0.5673.0At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.S.X.H.G.
0.5673.0At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5368.6At1g72950843626disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMS.X.H.G.
0.4862.5At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
0.4558.3At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.4355.3At5g01560830345LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3)Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.S.X.H.G.
0.4050.8At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
82.199.9GSM39204Col_Chitin2GSE2169rre1 and rre2 mutants
77.299.9GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
74.799.9GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.265e-75282At4g11070826708WRKY41member of WRKY Transcription Factor; Group IIIC.G.S.X.
0.025e-446At4g23550828455WRKY29Encodes WRKY DNA-binding protein 29 (WRKY29).C.G.S.X.
0.035e-446At2g44745819083WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POC.G.S.X.
0.032e-344At2g30250817575WRKY25member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.C.G.S.X.
0.022e-344At2g37260818303TTG2 (TRANSPARENT TESTA GLABRA 2)Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.C.G.S.X.
0.028e-342At4g24240828525WRKY7Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.097e-446Glycine maxGmaAffx.51816.1.S1_atBE804769WRKY20 protein /// WRKY46 protein-3e-4At4g23810WRKY53C.G.S.X.
0.029e-134Hordeum vulgareContig17468_atContig17468--2e+0At4g22570APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)C.G.S.X.
0.029e-136Oryza sativaOsAffx.8338.1.S1_x_at---0C.G.S.X.
0.071e-552Populus trichocarpaPtpAffx.61554.1.S1_s_atCV257636hypothetical protein-8e-6At4g23810WRKY53C.G.S.X.
0.031e-138Triticum aestivumTa.26370.1.A1_atCD491128--3e-8At3g13200EMB2769 (EMBRYO DEFECTIVE 2769)C.G.S.X.
0.042e-446Vitis vinifera1611550_atCD800189hypothetical protein LOC100263619-2e-9At4g11070WRKY41C.G.S.X.
0.025e-238Zea maysZm.5395.1.A1_atAI491596hypothetical protein LOC100191898-1e+0At3g30580unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.
XGO:0045941Any process that activates or increases the frequency, rate or extent of transcription.
XGO:0031347Any process that modulates the frequency, rate or extent of a defense response.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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