CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23700

Gene name ATCHX17 (CATION/H+ EXCHANGER 17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family S.X. H.G.
0.25 22.6 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM S.X. H.G.
0.12 4.9 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. S.X. H.G.
0.09 2.8 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA S.X. H.G.
0.04 0.9 At1g60730 842367 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
345.3 100.0 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
85.6 99.9 E-MEXP-1468-raw-cel-1591138688
82.1 99.9 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
69.0 99.9 E-MEXP-1094-raw-cel-1379507313
57.8 99.8 E-MEXP-1468-raw-cel-1591138820
57.1 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
48.6 99.8 GSM291124 root - 21% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
47.4 99.8 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
47.3 99.8 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
46.2 99.8 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 6e-12 73 At5g41610 834163 ATCHX18 member of Putative Na+/H+ antiporter family C.G. S.X.
0.06 5e-9 63 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family C.G. S.X.
0.04 8e-5 50 At3g53720 824539 ATCHX20 (CATION/H+ EXCHANGER 20) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells. C.G. S.X.
0.01 5e-3 44 At3g18770 821408 - F:unknown;P:unknown;C:chloroplast;OFMPBV C.G. S.X.
0.02 5e-3 44 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 8e-2 40 At5g19260 832046 unknown protein F:unknown;P:unknown;C:unknown;MOFPBV C.G. S.X.
0.01 8e-2 40 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.01 8e-2 40 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-2 42 Glycine max HgAffx.8701.1.S1_at CB379800 - - 2e-2 At1g28550 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig10682_at Contig10682 - - 5e-1 At3g51010 unknown protein C.G. S.X.
0.06 4e-5 52 Oryza sativa Os05g0276100 AK069092.1 - Na+/H+ exchangeing protein-like 2e-5 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.10 2e-9 65 Populus trichocarpa PtpAffx.203278.1.S1_at pmrna6498 cation proton exchanger - 3e-10 At5g41610 ATCHX18 C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.52063.1.S1_at CA713823 - - 8e-3 At2g42190 unknown protein C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1608408_at CF404680 hypothetical protein LOC100267086 - 7e-9 At1g51500 CER5 (ECERIFERUM 5) C.G. S.X.
0.01 1e-1 38 Zea mays ZmAffx.1307.1.S1_at 11990232-75 30S ribosomal protein S7 - 3e-114 Atcg00905 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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