CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23690

Gene name disease resistance-responsive family protein / dirigent family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.74 86.1 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.72 84.8 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.71 84.2 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.71 84.2 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM S.X. H.G.
0.69 82.9 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
0.69 82.9 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV S.X. H.G.
0.69 82.9 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.69 82.9 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. S.X. H.G.
0.67 81.6 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
70.7 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
70.7 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
67.5 99.8 GSM266675 Arabidopsis, root cells, stele, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
66.6 99.8 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
60.1 99.8 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
50.8 99.8 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
50.0 99.8 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
48.5 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
48.1 99.8 GSM266676 Arabidopsis, root cells, stele, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
44.7 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 2e-30 133 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.38 3e-19 95 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.28 3e-16 85 At4g11180 826720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.34 3e-13 75 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
0.03 1e+0 34 At5g05420 830425 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA C.G. S.X.
0.01 1e+0 34 At5g19310 832051 homeotic gene regulator, putative F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 1e+0 34 At5g38620 833852 MADS-box protein (AGL73) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.02 1e+0 34 At4g14290 827070 - F:unknown;P:unknown;C:plasma membrane;OBMFPVA C.G. S.X.
0.01 1e+0 34 At3g21630 821717 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max PsAffx.psHB014xG23f_at PsAffx.psHB014xG23f - - 1e-6 At2g14670 ATSUC8 (Sucrose-proton symporter 8) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig11763_s_at Contig11763 - - 7e-2 At4g09270 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os07g0637800 9635.m04457 - - 1e+0 At4g18620 - C.G. S.X.
0.12 2e+0 34 Populus trichocarpa PtpAffx.203277.1.S1_at pmrna6496 hypothetical protein - 1e-3 At1g64160 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.97800.1.S1_at BQ803553 - - 5e-2 At1g54575 unknown protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1621696_at CD800064 hypothetical protein LOC100243296 - 9e+0 At5g44720 molybdenum cofactor sulfurase family protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.7472.1.A1_at BM078895 hypothetical protein LOC100274148 - 2e+0 At4g23690 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
C GO:0009807 The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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