CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23680

Gene name major latex protein-related / MLP-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At4g23680 828468 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO S.X. H.G.
0.14 6.8 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.06 1.4 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.04 0.9 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.2 99.7 Cornah_1-11_A3-msx_Rep3_ATH1
27.5 99.7 E-MEXP-1310-raw-cel-1534419254
25.2 99.6 GSM187253 hy5_HL_A GSE7743 Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
25.1 99.6 Cornah_1-12_A4-wsx_Rep3_ATH1
24.2 99.6 Cornah_1-10_A2-irv_Rep3_ATH1
23.7 99.6 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
23.4 99.6 E-MEXP-1310-raw-cel-1534419293
22.1 99.6 GSM245493 9 hr Non-Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
21.6 99.6 GSM187255 hy5_HL_C GSE7743 Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
21.2 99.6 GSM131586 ATGE_34_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 6e-116 416 At4g23670 828467 major latex protein-related / MLP-related F:copper ion binding;P:response to cadmium ion, response to salt stress, defense response to bacterium;C:vacuole;P C.G. S.X.
0.77 7e-60 230 At3g26460 822251 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.61 4e-43 174 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.71 1e-39 163 At3g26450 822250 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.74 3e-34 145 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.52 5e-27 121 At4g14060 827042 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.65 1e-24 113 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.22 1e-21 103 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.63 7e-17 87 At1g14940 838059 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Glycine max Gma.17831.1.S1_at AW277767 - - 3e-1 At5g27810 sequence-specific DNA binding / transcription factor C.G. S.X.
0.04 4e-1 34 Hordeum vulgare HU03I15u_s_at HU03I15u - - 8e-1 At4g23680 major latex protein-related / MLP-related C.G. S.X.
0.04 2e+0 34 Oryza sativa Os05g0182001 9633.m00795 - - 3e-3 At1g71730 unknown protein C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.212580.1.S1_at pmrna24643 hypothetical protein - 2e-6 At3g49250 DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.104857.1.S1_at CA743929 - - 1e+0 At4g23680 major latex protein-related / MLP-related C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1607856_at CB342234 - - 1e+0 At4g23680 major latex protein-related / MLP-related C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.1209.1.A1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0009607 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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