CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23590

Gene name aminotransferase class I and II family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF S.X. H.G.
0.89 94.6 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF S.X. H.G.
0.88 94.0 At1g48070 841225 - F:molecular_function unknown;P:cell redox homeostasis;C:cellular_component unknown;BPO S.X. H.G.
0.87 93.5 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF S.X. H.G.
0.85 92.4 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.85 92.4 At2g04025 814929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.84 91.9 At1g26680 839209 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM S.X. H.G.
0.83 91.4 At1g21340 838733 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO S.X. H.G.
0.82 90.9 At3g55550 824720 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.81 90.4 At1g04180 837024 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
328.2 100.0 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
311.4 100.0 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
306.1 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
288.8 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
284.5 100.0 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
259.7 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
256.4 100.0 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
242.5 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
198.2 100.0 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
186.3 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 3e-117 422 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. C.G. S.X.
0.02 1e-2 42 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF C.G. S.X.
0.02 4e-2 40 At4g28420 828959 aminotransferase, putative F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPAMF C.G. S.X.
0.02 2e-1 38 At2g20610 816585 SUR1 (SUPERROOT 1) Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis. C.G. S.X.
0.02 6e-1 36 At2g24850 817022 TAT3 (TYROSINE AMINOTRANSFERASE 3) Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-5 52 Glycine max Gma.10835.1.S1_at CD406757 tyrosine aminotransferase - 7e-17 At5g53970 aminotransferase, putative C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig5073_x_at Contig5073 - - 2e+0 At5g12030 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) C.G. S.X.
0.02 3e-1 38 Oryza sativa Os02g0216500 AK108561.1 - Hypothetical protein 8e-1 At1g27330 - C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.209949.1.S1_at pmrna19623 aminotransferase family protein - 5e-26 At5g53970 aminotransferase, putative C.G. S.X.
0.03 7e-1 36 Triticum aestivum TaAffx.80938.1.S1_at CA690976 - - 1e-3 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1610613_at CF405805 hypothetical protein LOC100243271 - 2e-27 At1g03475 LIN2 (LESION INITIATION 2) C.G. S.X.
0.03 1e+0 34 Zea mays Zm.17532.1.A1_at CK369868 hypothetical protein LOC100279205 - 2e-1 At5g53970 aminotransferase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
L GO:0006519 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents, and compounds derived from amino acids, as carried out by individual cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00017 Aromatic amino acid biosynthesis
00087 Tyrosine degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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