CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23580

Gene name kelch repeat-containing F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At4g23580 828458 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF S.X. H.G.
0.75 86.9 At2g33010 817863 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.74 86.1 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.74 86.1 At4g22500 - - - S.X. H.G.
0.72 84.8 At5g37860 833764 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM S.X. H.G.
0.72 84.8 At1g50680 841490 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV S.X. H.G.
0.72 84.8 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.71 84.2 At2g13640 815849 Golgi GDP mannose transporter (GONST1) F:unknown;P:transcription;C:nucleus;OMBPFVA S.X. H.G.
0.69 82.9 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At2g33160 817877 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
363.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
349.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
344.6 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
305.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
289.9 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
287.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
283.8 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
267.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
252.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
248.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.90 0 1237 At4g33900 829533 kelch repeat-containing F-box family protein F:unknown;P:unknown;C:cellular_component unknown;MPOBVA C.G. S.X.
0.50 2e-71 270 At4g34170 829565 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA C.G. S.X.
0.29 1e-20 101 At3g43710 823479 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOVBAF C.G. S.X.
0.20 7e-13 75 At4g39290 830085 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOVBA C.G. S.X.
0.11 4e-11 69 At1g77880 844124 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.08 4e-8 59 At5g48980 834957 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMV C.G. S.X.
0.10 2e-7 57 At4g39550 830109 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAFV C.G. S.X.
0.14 6e-7 56 At5g51250 835199 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAV C.G. S.X.
0.04 6e-7 56 At2g20380 816557 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.89726.1.A1_s_at CK605851 Williams 82 lipoxygenase - 6e-1 At2g41190 amino acid transporter family protein C.G. S.X.
0.02 7e-2 38 Hordeum vulgare EBro08_SQ012_P22_at EBro08_SQ012_P22 - - 1e-2 At1g07340 ATSTP2 (SUGAR TRANSPORTER 2) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os11g0646600 9639.m03938 - - 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative C.G. S.X.
0.02 5e-2 40 Populus trichocarpa PtpAffx.210259.1.S1_s_at pmrna20190 hypothetical protein - 1e-2 At5g62950 catalytic/ nucleotide binding C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.70657.1.S1_s_at BQ802141 - - 2e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1614342_at BM437942 hypothetical protein LOC100248845 - 4e-7 At2g18328 ATRL4 (ARABIDOPSIS RAD-LIKE 4) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1098.1.A1_at AW126565 triacylglycerol lipase - 3e+0 At1g71260 ATWHY2 (A. THALIANA WHIRLY 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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