CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23420

Gene name short-chain dehydrogenase/reductase (SDR) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.38 46.7 At1g77130 844049 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;PMFBVO S.X. H.G.
0.36 43.6 At1g26440 839185 ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5) uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine S.X. H.G.
0.35 41.6 At2g15230 816012 ATLIP1 (Arabidopsis thaliana lipase 1) Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular. S.X. H.G.
0.35 41.6 At2g33630 817929 3-beta hydroxysteroid dehydrogenase/isomerase family protein F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPV S.X. H.G.
0.35 41.6 At5g54800 835570 GPT1 glucose6-Phosphate/phosphate transporter 1 S.X. H.G.
0.34 39.8 At4g40060 830169 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. S.X. H.G.
0.34 39.8 At1g60710 842365 ATB2 Encodes ATB2. S.X. H.G.
0.33 38.1 At5g04740 830352 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB S.X. H.G.
0.30 32.1 At3g28950 822532 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.8 99.8 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
35.7 99.7 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
30.2 99.7 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
27.7 99.7 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
27.4 99.7 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
27.3 99.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
27.0 99.7 GSM231200 chl1 at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
26.9 99.7 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
26.7 99.7 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
25.6 99.7 GSM231194 wild-type at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.92 0 1320 At4g23430 828442 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOMFPA C.G. S.X.
0.34 2e-34 147 At4g11410 826745 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
0.05 8e-3 42 At5g02540 831913 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
0.02 3e-2 40 At3g46170 823760 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to cadmium ion;C:cellular_component unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-19 97 Glycine max Gma.3556.1.S1_at CD413586 - - 5e-17 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare HV14N24u_s_at HV14N24u - - 2e+0 At4g24590 unknown protein C.G. S.X.
0.04 1e-2 42 Oryza sativa Os09g0570300 AK058687.1 - Short-chain dehydrogenase Tic32 2e-4 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.30 2e-28 127 Populus trichocarpa PtpAffx.200419.1.S1_at pmrna843 hypothetical protein - 2e-28 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.8196.2.S1_at CK211943 - - 1e+0 At5g27440 unknown protein C.G. S.X.
0.28 3e-21 101 Vitis vinifera 1619126_s_at CF515258 hypothetical protein LOC100264493 - 1e-20 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.19227.1.S1_at CO533358 - - 2e-7 At5g02540 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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