Gene omics information

Query gene ID At4g23420
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g23420828441short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAS.X.H.G.
0.3846.7At1g77130844049PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2)F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;PMFBVOS.X.H.G.
0.3643.6At1g26440839185ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthineS.X.H.G.
0.3541.6At2g15230816012ATLIP1 (Arabidopsis thaliana lipase 1)Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.S.X.H.G.
0.3541.6At2g336308179293-beta hydroxysteroid dehydrogenase/isomerase family proteinF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPVS.X.H.G.
0.3541.6At5g54800835570GPT1glucose6-Phosphate/phosphate transporter 1S.X.H.G.
0.3439.8At4g40060830169ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.S.X.H.G.
0.3439.8At1g60710842365ATB2Encodes ATB2.S.X.H.G.
0.3338.1At5g04740830352ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POBS.X.H.G.
0.3032.1At3g28950822532avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
54.899.8GSM231201chl1 at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
35.799.7GSM231204chl1 at T0.5, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
30.299.7GSM231195wild-type at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
27.799.7GSM231199chl1 at T0, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
27.499.7GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
27.399.7GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
27.099.7GSM231200chl1 at T0, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
26.999.7GSM231197wild-type at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
26.799.7GSM231198wild-type at T0.5, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
25.699.7GSM231194wild-type at T0, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9201320At4g23430828442short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOMFPAC.G.S.X.
0.342e-34147At4g11410826745short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
0.058e-342At5g02540831913short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
0.023e-240At3g46170823760short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:response to cadmium ion;C:cellular_component unknown;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.252e-1997Glycine maxGma.3556.1.S1_atCD413586--5e-17At4g23430short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.034e+032Hordeum vulgareHV14N24u_s_atHV14N24u--2e+0At4g24590unknown proteinC.G.S.X.
0.041e-242Oryza sativaOs09g0570300AK058687.1-Short-chain dehydrogenase Tic322e-4At4g11410short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.302e-28127Populus trichocarpaPtpAffx.200419.1.S1_atpmrna843hypothetical protein-2e-28At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.035e-136Triticum aestivumTa.8196.2.S1_atCK211943--1e+0At5g27440unknown proteinC.G.S.X.
0.283e-21101Vitis vinifera1619126_s_atCF515258hypothetical protein LOC100264493-1e-20At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.032e-136Zea maysZm.19227.1.S1_atCO533358--2e-7At5g02540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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