CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23260

Gene name ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.50 65.3 At4g23300 828429 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.40 50.8 At1g66910 843009 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.21 15.8 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
77.7 99.9 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
43.0 99.8 E-MEXP-509-raw-cel-829148703
34.1 99.7 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
30.2 99.7 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
29.4 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.8 99.7 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.3 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
26.0 99.7 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
25.1 99.6 GSM128671 Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.4 99.6 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 0 1457 At4g23250 828424 EMB1290 (EMBRYO DEFECTIVE 1290) F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.26 3e-90 333 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.23 6e-73 276 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.28 2e-72 274 At4g23230 828422 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.22 2e-66 254 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.27 5e-61 236 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.15 3e-56 220 At4g23160 828415 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.31 1e-55 218 At4g23240 828423 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-7 59 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.05 1e-1 38 Hordeum vulgare Contig14572_at Contig14572 - - 3e-5 At4g21410 protein kinase family protein C.G. S.X.
0.04 5e-4 48 Oryza sativa Os07g0541500 AK111550.1 - KI domain interacting kinase 1 3e-4 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.08 2e-5 52 Populus trichocarpa PtpAffx.224360.1.S1_x_at pmrna42826 hypothetical protein - 2e-42 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.06 7e-2 40 Triticum aestivum Ta.25487.1.S1_at CD373987 - - 3e-2 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.03 7e-2 38 Vitis vinifera 1612784_at CB923182 hypothetical protein LOC100257888 - 5e-6 At4g11490 protein kinase family protein C.G. S.X.
0.04 4e-4 46 Zea mays Zm.359.1.S1_at U82481.1 kinase interacting kinase1 - 2e-6 At3g16030 CES101 (CALLUS EXPRESSION OF RBCS 101) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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