CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23210

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.93 96.4 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.92 96.0 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.83 91.4 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.71 84.2 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.67 81.6 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.63 78.1 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.43 55.3 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
175.4 100.0 E-MEXP-546-raw-cel-863289586
165.3 100.0 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
140.8 99.9 GSM128687 Underwood_1-40_E.coli-TUV86-2-fliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
125.3 99.9 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
124.7 99.9 GSM128684 Underwood_1-37_E.coli-0157-H7-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
122.9 99.9 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
121.1 99.9 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
118.5 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
117.9 99.9 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
106.0 99.9 GSM128682 Underwood_1-35_E.coli-0157-H7-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 0 1372 At4g23300 828429 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.16 3e-68 260 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.15 2e-60 234 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA C.G. S.X.
0.17 4e-49 196 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.12 4e-43 176 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.20 2e-41 171 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-7 57 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.03 3e-2 40 Hordeum vulgare rbaal13b22_at rbaal13b22 - - 2e-5 At4g05200 protein kinase family protein C.G. S.X.
0.01 3e-2 42 Oryza sativa Os07g0541800 AK102941.1 - KI domain interacting kinase 1 5e-6 At4g04540 protein kinase family protein C.G. S.X.
0.03 3e-4 48 Populus trichocarpa PtpAffx.225233.1.S1_at pmrna44425 hypothetical protein - 2e-11 At4g21366 ATP binding / protein tyrosine kinase C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.104608.1.S1_at CA747059 - - 1e+1 At5g55856 - C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1610154_at CB344341 hypothetical protein LOC100256753 - 4e-3 At5g52890 AT hook motif-containing protein C.G. S.X.
0.03 6e-3 42 Zea mays Zm.11547.1.S1_at CA827895 hypothetical protein LOC100276375 - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0002237 A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
X GO:0009626 The rapid, localized death of plant cells in response to invasion by a pathogen.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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