CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23200

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA S.X. H.G.
0.80 89.8 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV S.X. H.G.
0.73 85.5 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.59 74.7 At5g53750 835456 - F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At2g27690 817315 CYP94C1 Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment. S.X. H.G.
0.48 62.5 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.39 48.4 At1g17420 838314 LOX3 Lipoxygenase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.5 99.9 GSM131145 AtGen_B-31_3-3-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
98.1 99.9 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
96.3 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
92.6 99.9 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
78.3 99.9 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
74.3 99.9 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
70.5 99.9 GSM142849 MG001_ATH1_A2-Torres-1N3 GSE6176 Impact of Type III effectors on plant defense responses
70.2 99.9 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
65.0 99.8 GSM131143 AtGen_B-29_3-1-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
64.4 99.8 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 8e-131 468 At4g23220 828421 kinase F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.24 1e-77 291 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.26 1e-74 282 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.25 4e-71 270 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.25 3e-62 240 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.21 5e-61 236 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.24 1e-58 228 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-4 48 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.03 8e-9 61 Hordeum vulgare Contig16360_at Contig16360 - - 7e-3 At4g21366 ATP binding / protein tyrosine kinase C.G. S.X.
0.04 3e-5 52 Oryza sativa OsAffx.23363.1.S1_at - - - 0 C.G. S.X.
0.14 2e-11 71 Populus trichocarpa PtpAffx.224360.1.S1_x_at pmrna42826 hypothetical protein - 2e-42 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.04 2e-2 42 Triticum aestivum TaAffx.77639.1.S1_at CA744867 - - 1e-3 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.06 3e-1 36 Vitis vinifera 1620671_at CA817707 hypothetical protein LOC100261049 - 1e-13 At1g11340 S-locus lectin protein kinase family protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.4140.1.S1_at BE552528 hypothetical protein LOC100191980 - 2e-17 At1g69790 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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