CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23190

Gene name CRK11 (CYSTEINE-RICH RLK11)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.67 81.6 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO S.X. H.G.
0.57 73.8 At3g01830 820033 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.40 50.8 At2g25735 817115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.31 33.8 At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.2 100.0 E-MEXP-807-raw-cel-1173273170
157.6 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
140.5 99.9 E-MEXP-807-raw-cel-1173273223
119.0 99.9 E-MEXP-807-raw-cel-1173273060
116.1 99.9 E-MEXP-1443-raw-cel-1581869803
115.5 99.9 E-MEXP-807-raw-cel-1173273116
115.0 99.9 E-MEXP-1443-raw-cel-1581869745
108.9 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
108.8 99.9 E-MEXP-807-raw-cel-1173273252
89.4 99.9 E-MEXP-807-raw-cel-1173273144
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 0 724 At4g23300 828429 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.31 3e-96 353 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.25 1e-83 311 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.24 1e-77 291 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.17 2e-75 284 At4g23160 828415 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.19 2e-63 244 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.29 9e-63 242 At4g23230 828422 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.19 3e-53 210 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-8 61 Glycine max GmaAffx.87812.1.S1_at AW831390 - - 4e-23 At4g38830 protein kinase family protein C.G. S.X.
0.07 3e-5 50 Hordeum vulgare Contig6958_s_at Contig6958 - - 8e-5 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.05 9e-15 83 Oryza sativa Os05g0493100 AK110420.1 - KI domain interacting kinase 1 6e-15 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.19 2e-42 174 Populus trichocarpa PtpAffx.224360.1.S1_x_at pmrna42826 hypothetical protein - 2e-42 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.05 2e-5 52 Triticum aestivum Ta.4696.1.S1_at BJ275186 - - 6e-6 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.06 5e-6 52 Vitis vinifera 1612784_at CB923182 hypothetical protein LOC100257888 - 5e-6 At4g11490 protein kinase family protein C.G. S.X.
0.03 3e-5 50 Zea mays Zm.359.1.S1_at U82481.1 kinase interacting kinase1 - 2e-6 At3g16030 CES101 (CALLUS EXPRESSION OF RBCS 101) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
X GO:0009816 A response of an organism to a bacterium that prevents the occurrence or spread of disease.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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