CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23140

Gene name CRK6 (CYSTEINE-RICH RLK 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.86 93.1 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.57 73.8 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
0.29 30.3 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.1 99.9 E-MEXP-739-raw-cel-1099467330
74.7 99.9 E-MEXP-739-raw-cel-1099467303
71.8 99.9 E-MEXP-739-raw-cel-1099467312
63.8 99.8 E-MEXP-739-raw-cel-1099467339
59.0 99.8 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
56.6 99.8 GSM133046 2788 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
52.3 99.8 GSM133091 JD AT+EO COL WT EXP2 05D INFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
51.9 99.8 GSM250949 mil4 overexpression line with BTH treatment, biological rep2 GSE9956 Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
50.5 99.8 GSM133050 2791 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
49.8 99.8 GSM133048 2790 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 0 2048 At4g23160 828415 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.54 0 831 At4g23230 828422 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.71 0 795 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.50 0 761 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.44 6e-104 379 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA C.G. S.X.
0.41 1e-92 341 At4g23170 828416 EP1 Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene's basal expression. C.G. S.X.
0.24 1e-77 291 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.23 6e-73 276 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-11 71 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.07 2e-3 44 Hordeum vulgare Contig21140_at Contig21140 - - 1e-7 At4g27300 S-locus protein kinase, putative C.G. S.X.
0.03 1e-4 50 Oryza sativa Os04g0226600 AK119282.1 - Receptor-like protein kinase 4 6e-6 At1g11280 S-locus protein kinase, putative C.G. S.X.
0.23 6e-6 54 Populus trichocarpa PtpAffx.3261.1.S1_s_at DN491640 hypothetical protein - 2e-17 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.03 4e+0 34 Triticum aestivum TaAffx.81722.1.S1_at CA682624 - - 3e-1 At2g19130 S-locus lectin protein kinase family protein C.G. S.X.
0.05 3e-4 46 Vitis vinifera 1612784_at CB923182 hypothetical protein LOC100257888 - 5e-6 At4g11490 protein kinase family protein C.G. S.X.
0.04 5e-4 46 Zea mays Zm.359.1.S1_at U82481.1 kinase interacting kinase1 - 2e-6 At3g16030 CES101 (CALLUS EXPRESSION OF RBCS 101) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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