CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23130

Gene name CRK5 (CYSTEINE-RICH RLK5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.67 81.6 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. S.X. H.G.
0.64 78.9 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. S.X. H.G.
0.55 70.6 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. S.X. H.G.
0.53 68.6 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO S.X. H.G.
0.52 67.4 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. S.X. H.G.
0.50 65.3 At1g65790 842890 ARK1 (A. THALIANA RECEPTOR KINASE 1) An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. S.X. H.G.
0.44 57.2 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. S.X. H.G.
0.38 46.7 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.8 99.8 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
34.7 99.7 GSM264761 Tween 0.1% 1h GSE10464 Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)
34.3 99.7 GSM134378 St.Clair_1-39_394_Est_0.02%-silwet_Rep3_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
31.0 99.7 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
31.0 99.7 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
29.2 99.7 GSM142840 MG001_ATH1_A1-Torres-1N1 GSE6176 Impact of Type III effectors on plant defense responses
29.1 99.7 GSM142850 MG001_ATH1_A3-Torres-1N6 GSE6176 Impact of Type III effectors on plant defense responses
27.9 99.7 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
27.9 99.7 GSM128687 Underwood_1-40_E.coli-TUV86-2-fliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
27.1 99.7 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 0 718 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.40 0 698 At4g23270 828426 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.42 0 656 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA C.G. S.X.
0.43 3e-155 549 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.24 2e-97 357 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.26 4e-71 270 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.25 4e-71 270 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA C.G. S.X.
0.23 8e-57 222 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-5 52 Glycine max Gma.17797.1.S1_at CD416100 - - 3e-12 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.04 3e-5 50 Hordeum vulgare Contig7955_s_at Contig7955 - - 4e-4 At3g45860 receptor-like protein kinase, putative C.G. S.X.
0.04 8e-3 44 Oryza sativa Os04g0633600 9632.m05256 - - 1e-9 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding C.G. S.X.
0.12 2e-8 61 Populus trichocarpa PtpAffx.3261.1.S1_s_at DN491640 hypothetical protein - 2e-17 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.04 7e-2 40 Triticum aestivum TaAffx.77639.1.S1_at CA744867 - - 1e-3 At4g23180 CRK10 (CYSTEINE-RICH RLK10) C.G. S.X.
0.06 3e-4 46 Vitis vinifera 1612784_at CB923182 hypothetical protein LOC100257888 - 5e-6 At4g11490 protein kinase family protein C.G. S.X.
0.02 2e-3 44 Zea mays Zm.5069.1.A1_at AY111851.1 hypothetical protein LOC100192804 - 2e-4 At1g61460 S-locus protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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