CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22980

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.16 8.8 At4g22980 828397 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBA S.X. H.G.
0.57 73.8 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. S.X. H.G.
0.40 50.8 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
0.33 38.1 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.08 2.3 At1g01560 839523 ATMPK11 member of MAP Kinase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.7 99.9 E-MEXP-1443-raw-cel-1581869921
78.9 99.9 E-MEXP-546-raw-cel-863289424
71.0 99.9 E-MEXP-807-raw-cel-1173272948
70.6 99.9 E-MEXP-546-raw-cel-863289532
64.7 99.8 E-MEXP-1443-raw-cel-1581869863
57.7 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
56.1 99.8 E-MEXP-546-raw-cel-863289476
54.0 99.8 E-MEXP-546-raw-cel-863289586
51.0 99.8 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
49.3 99.8 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-2 40 At4g37640 829918 ACA2 (CALCIUM ATPASE 2) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. C.G. S.X.
0.01 2e-1 38 At5g46660 834709 CHP-rich zinc finger protein, putative F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At5g02330 831755 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 2e-1 38 At3g14610 820689 CYP72A7 putative cytochrome P450 C.G. S.X.
0.01 2e-1 38 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 8e-1 36 At5g55800 835674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM C.G. S.X.
0.01 8e-1 36 At5g48910 834949 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFB C.G. S.X.
0.01 8e-1 36 At4g32000 829331 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 8e-1 36 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max Gma.4678.1.A1_at AW309914 - - 3e-10 At4g35970 APX5 (ASCORBATE PEROXIDASE 5) C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig15683_at Contig15683 - - 4e-1 At3g05220 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 4e-1 38 Oryza sativa OsAffx.25151.1.S1_at - - - 0 C.G. S.X.
0.02 7e-2 40 Populus trichocarpa Ptp.7077.1.S1_at DN488141 - - 2e+1 At4g32800 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.7328.2.S1_at CD892592 - - 6e-4 At3g15150 zinc ion binding C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1607200_at CB972628 - - 1e+0 At2g41600 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.5591.1.S1_at CD435593 hypothetical protein LOC100273390 - 4e-17 At4g30620 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage