CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22960

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.72 84.8 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.90 95.1 At5g03250 831894 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PM S.X. H.G.
0.89 94.6 At2g30630 817613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.86 93.1 At1g24400 839057 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers S.X. H.G.
0.83 91.4 At3g18360 821365 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.82 90.9 At1g32250 840117 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
0.81 90.4 At5g25400 832612 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB S.X. H.G.
0.80 89.8 At1g22760 838882 PAB3 (POLY(A) BINDING PROTEIN 3) Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs. S.X. H.G.
0.80 89.8 At2g04020 814928 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:N-terminal protein myristoylation, lipid metabolic process;C:endomembrane system;PBM S.X. H.G.
0.80 89.8 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
178.8 100.0 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
162.2 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
126.2 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
123.6 99.9 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
120.5 99.9 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
113.6 99.9 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
108.4 99.9 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
107.8 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
100.4 99.9 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
97.5 99.9 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-2 42 At4g11860 826793 - F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPB C.G. S.X.
0.01 5e-2 40 At2g31780 817735 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.01 5e-2 40 At2g31760 817733 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.02 8e-1 36 At5g48200 834873 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 8e-1 36 At5g48205 2746199 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 8e-1 36 At5g52910 835368 ATIM (TIMELESS) homolog of Drosophila timeless C.G. S.X.
0.02 8e-1 36 At1g57565 842132 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.49908.1.S1_at BU925852 - - 4e-12 At5g49555 amine oxidase-related C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
Os04g0512750 0.01 2e+0 Oryza sativa Os01g0600600 NM_192634.1 - - 6e-2 At2g45440 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) C.G. S.X.
0.04 3e-1 38 Populus trichocarpa PtpAffx.200464.1.S1_at pmrna933 hypothetical protein - 7e-42 At4g11860 - C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.105253.2.S1_at CA734932 - - 8e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative C.G. S.X.
0.01 1e+0 34 Zea mays Zm.1208.2.A1_at AY106293.1 - - 1e+0 At3g14850 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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