Gene omics information

Query gene ID At4g22950
Gene name AGL19 (AGAMOUS-LIKE 19)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g22950828394AGL19 (AGAMOUS-LIKE 19)MADS-box protein AGL19S.X.H.G.
0.3643.6At3g51960824359bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMS.X.H.G.
0.3643.6At2g36370818210ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBVS.X.H.G.
0.3338.1At5g18360831954disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVS.X.H.G.
0.3338.1At5g65850836714F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.3235.7At3g56250824791unknown proteinF:unknown;P:unknown;C:unknown;OFMPBS.X.H.G.
0.3235.7At2g27790817326nucleic acid binding / nucleotide bindingF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.3133.8At3g04490819605unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.2930.3At3g19470821481F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.2830.3At5g02680831842ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingF:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;MPBOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
336.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
121.399.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.599.9GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1
112.699.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.999.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.299.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
98.099.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
92.499.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
91.399.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.399.9GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.661e-49196At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.C.G.S.X.
0.224e-22105At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.C.G.S.X.
0.139e-1477At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesC.G.S.X.
0.089e-857At3g54340824601AP3 (APETALA 3)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.C.G.S.X.
0.103e-756At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-654Glycine maxGma.16618.1.S1_atBE330897SOC1-4e-12At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.033e+032Hordeum vulgareContig7723_atContig7723--2e+0At5g55280FTSZ1-1C.G.S.X.
0.062e-138Oryza sativaOs.49760.1.S1_at---0C.G.S.X.
0.149e-24111Populus trichocarpaPtpAffx.99434.1.S1_atCV245843hypothetical protein-6e-31At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.109e-857Triticum aestivumTa.25343.1.A1_atCD374116MADS-box transcription factor TaAGL7-1e-7At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.106e-650Vitis vinifera1615428_atAF373601.1MADS-box protein 2-2e-40At5g15800SEP1 (SEPALLATA1)C.G.S.X.
0.079e-650Zea maysZm.15830.1.A1_atAI491392--3e-5At4g22950AGL19 (AGAMOUS-LIKE 19)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010048The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures.
XGO:0048510The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage