Gene omics information

Query gene ID At4g22920
Gene name NYE1 (NON-YELLOWING 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At4g22920828391NYE1 (NON-YELLOWING 1)Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.S.X.H.G.
0.3338.1At2g25625817103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.2522.6At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolS.X.H.G.
0.2522.6At5g01520831747zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVFS.X.H.G.
0.2014.4At3g03470821250CYP89A9member of CYP89AS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
233.2100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
127.099.9GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
118.799.9GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
105.899.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
97.999.9GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
97.599.9GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
94.799.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
92.899.9GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
84.799.9GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
79.999.9GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.532e-95349At4g11910826798-F:unknown;P:biological_process unknown;C:chloroplast;PBOC.G.S.X.
0.556e-68258At4g119116240548-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOC.G.S.X.
0.011e-138At5g47490834799unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.024e-136Atmg00520--hypothetical proteinC.G.S.X.
0.034e-136At3g48540824013cytidine/deoxycytidylate deaminase family proteinF:hydrolase activity, zinc ion binding, catalytic activity;P:biological_process unknown;C:endomembrane system;BOMFVAPC.G.S.X.
0.014e-136At2g39300818515unknown proteinF:unknown;P:biological_process unknown;C:vacuole;MOBFPAVC.G.S.X.
0.014e-136At1g12430837799ARK3 (ARMADILLO REPEAT KINESIN 3)Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.C.G.S.X.
0.014e-136At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.096e-136Glycine maxGmaAffx.20450.1.S1_atCD416994--3e-1At4g22920NYE1 (NON-YELLOWING 1)C.G.S.X.
0.038e-134Hordeum vulgareEBro01_SQ002_M14_atEBro01_SQ002_M14--7e-1At5g19875unknown proteinC.G.S.X.
0.048e-136Oryza sativaOsAffx.13559.1.S1_at---0C.G.S.X.
0.323e-27123Populus trichocarpaPtpAffx.102503.1.A1_atAJ771366hypothetical protein-3e-27At4g22920NYE1 (NON-YELLOWING 1)C.G.S.X.
0.037e-342Triticum aestivumTaAffx.105574.1.S1_atCA732489--3e-1At4g33640unknown proteinC.G.S.X.
0.181e-1685Vitis vinifera1611296_atBM437675hypothetical protein LOC100265112-4e-16At4g22920NYE1 (NON-YELLOWING 1)C.G.S.X.
0.037e-134Zea maysZm.222.1.S1_atAB024291.1cytokinin response regulator2-4e-1At1g10470ARR4 (RESPONSE REGULATOR 4)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015996The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage