CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22610

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.40 50.8 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.36 43.6 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.36 43.6 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family S.X. H.G.
0.36 43.6 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. S.X. H.G.
0.33 38.1 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. S.X. H.G.
0.22 17.5 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV S.X. H.G.
0.21 15.8 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.19 12.7 At2g28850 817434 CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3) member of CYP710A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
222.8 100.0 GSM218594 Whole roots 3.5hr KNO3 treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
215.5 100.0 GSM184559 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
188.2 100.0 GSM218591 Whole roots 3.5hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.0 99.9 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
122.9 99.9 GSM184553 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.3 99.9 GSM39210 RRE2_C4 GSE2169 rre1 and rre2 mutants
107.7 99.9 GSM39202 Col_C4 GSE2169 rre1 and rre2 mutants
98.4 99.9 GSM39201 Col_C3 GSE2169 rre1 and rre2 mutants
84.2 99.9 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
79.3 99.9 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 7e-4 44 At4g22513 5008158 - Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.31 7e-4 44 At4g22520 828347 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.02 2e-1 36 At5g58690 835983 phosphoinositide-specific phospholipase C family protein F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP C.G. S.X.
0.01 2e-1 36 At5g35700 833544 FIM2 (FIMBRIN-LIKE PROTEIN 2) F:actin binding;P:biological_process unknown;C:cellular_component unknown;MOFP C.G. S.X.
0.13 2e-1 36 At4g22517 5008159 - Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.02 3e+0 32 At5g02460 830976 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFB C.G. S.X.
0.03 3e+0 32 At4g17540 827469 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMAF C.G. S.X.
0.04 3e+0 32 At4g35900 829744 FD bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia. C.G. S.X.
0.02 3e+0 32 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.44616.1.S1_at BE611542 - - 1e+0 At4g22610 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e-2 38 Hordeum vulgare Contig10807_at Contig10807 - - 1e-1 At4g22610 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 5e+0 32 Oryza sativa OsAffx.11876.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.113676.1.S1_at CX172911 hypothetical protein - 8e-2 At1g63470 DNA-binding family protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.57364.1.S1_at CA630595 - - 2e-1 At4g22610 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 8e-1 32 Vitis vinifera 1620053_at CF372394 hypothetical protein LOC100245511 - 3e-10 At4g22930 PYR4 (PYRIMIDIN 4) C.G. S.X.
0.03 1e+0 32 Zea mays Zm.6883.1.S1_at CN844698 small nuclear ribonucleoprotein E - 2e-2 At4g30330 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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