CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22460

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.53 68.6 At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) S.X. H.G.
0.53 68.6 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.50 65.3 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM S.X. H.G.
0.50 65.3 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV S.X. H.G.
0.40 50.8 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P S.X. H.G.
0.37 45.0 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA S.X. H.G.
0.33 38.1 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
331.4 100.0 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
220.9 100.0 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
202.9 100.0 GSM266669 Arabidopsis, root cells, cortex, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
171.6 100.0 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
156.8 99.9 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
116.0 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
103.2 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
86.1 99.9 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
77.5 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
75.8 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 9e-13 73 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.14 4e-12 71 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.14 4e-12 71 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.17 2e-10 65 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA C.G. S.X.
0.14 3e-9 61 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA C.G. S.X.
0.14 5e-8 57 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced C.G. S.X.
0.13 2e-4 46 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA C.G. S.X.
0.08 8e-4 44 At2g45180 819126 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast thylakoid membrane;P C.G. S.X.
0.02 2e-1 36 At5g64380 836559 fructose-1,6-bisphosphatase family protein F:phosphoric ester hydrolase activity;P:carbohydrate metabolic process;C:chloroplast;BOMPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-8 59 Glycine max Gma.2516.2.S1_s_at CF922276 - - 1e-7 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig21281_at Contig21281 - - 3e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.07 6e-3 42 Oryza sativa OsAffx.27948.1.S1_at - - - 0 C.G. S.X.
0.05 7e-2 38 Populus trichocarpa PtpAffx.17540.2.A1_a_at CV283560 - - 5e-10 At2g36990 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) C.G. S.X.
0.08 8e-4 44 Triticum aestivum TaAffx.8456.1.S1_at CA625136 - - 8e-4 At4g22460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.06 1e-2 38 Vitis vinifera 1606656_at CF212763 hypothetical protein LOC100262729 - 1e-1 At4g22460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 1e-3 42 Zea mays Zm.2541.1.A1_at CF629797 cortical cell-delineating protein - 2e+0 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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