CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22212

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.80 89.8 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. S.X. H.G.
0.67 81.6 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.36 43.6 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.33 38.1 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.4 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.6 99.9 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
63.1 99.8 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.8 99.8 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.2 99.8 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
50.7 99.8 GSM231203 chl1 at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
47.2 99.8 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
45.7 99.8 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
40.9 99.8 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
40.4 99.8 GSM231200 chl1 at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 2e-28 125 At4g22210 828312 LCR85 (Low-molecular-weight cysteine-rich 85) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. C.G. S.X.
0.37 4e-26 117 At4g22230 828317 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.18 9e-15 79 At4g22214 828314 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.26 1e-10 65 At4g22235 828318 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.01 5e-1 34 At5g21222 832244 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.02 2e+0 32 At1g24180 839031 IAR4 Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-1 34 Glycine max GmaAffx.31026.1.A1_at BE658965 - - 8e-1 At4g22212 - C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HVSMEa0002K15r2_s_at HVSMEa0002K15r2 - - 9e+0 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.05 2e-1 36 Oryza sativa Os.57512.1.A1_at - - - 0 C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.213083.1.S1_s_at pmrna25602 hypothetical protein - 3e+0 At4g22212 - C.G. S.X.
0.07 2e+0 32 Triticum aestivum Ta.8742.1.A1_at BQ162312 - - 1e+0 At4g22212 - C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1609560_at BQ796714 - - 3e-16 At5g37360 unknown protein C.G. S.X.
0.03 3e+0 30 Zea mays Zm.7304.2.S1_a_at CA409050 hypothetical protein LOC100274841 /// hypothetical protein LOC100275336 - 3e-1 At1g31335 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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