CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g22130

Gene name SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g22130 828302 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) F:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.22 17.5 At5g55480 835641 SVL1 (SHV3-LIKE 1) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. S.X. H.G.
0.09 2.8 At5g23430 832409 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV S.X. H.G.
0.06 1.4 At5g65700 836699 BAM1 (BARELY ANY MERISTEM 1) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. S.X. H.G.
0.02 0.4 At4g11450 826749 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PMO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.5 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.7 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.9 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.4 99.4 GSM133122 S0_12H_B GSE5688 AtGenExpress: Response to sulfate limitation
13.0 99.4 GSM133124 S0_24H_B GSE5688 AtGenExpress: Response to sulfate limitation
12.3 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.0 99.3 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.9 99.3 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.6 99.3 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.2 99.2 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-9 65 At3g14350 820655 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVA C.G. S.X.
0.06 5e-9 63 At1g53730 841811 SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.04 5e-6 54 At4g03390 827941 SRF3 (STRUBBELIG-RECEPTOR FAMILY 3) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.05 1e-3 46 At2g20850 816618 SRF1 (strubbelig receptor family 1) F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.02 2e-2 42 At3g53590 824527 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 9e-70 266 Glycine max GmaAffx.36693.1.S1_at BG881453 - - 2e-70 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.17 1e-32 141 Hordeum vulgare Contig6843_at Contig6843 - - 2e-32 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.17 3e-18 95 Oryza sativa Os02g0190500 AK111710.1 - Leucine-rich repeat transmembrane protein kinase 2 2e-18 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.46 1e-112 408 Populus trichocarpa PtpAffx.209626.1.S1_at pmrna19021 hypothetical protein - 3e-113 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.18 2e-33 145 Triticum aestivum Ta.27027.1.A1_at BT008918.1 - - 9e-34 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.17 3e-7 56 Vitis vinifera 1619614_at CF372273 hypothetical protein LOC100249831 - 2e-36 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
0.05 3e-11 69 Zea mays Zm.11939.1.A1_at CF624620 - - 7e-21 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage