CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g21950

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g21950 828284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g26620 832728 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At2g13640 815849 Golgi GDP mannose transporter (GONST1) F:unknown;P:transcription;C:nucleus;OMBPFVA S.X. H.G.
0.85 92.4 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.85 92.4 At1g32650 840159 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.84 91.9 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.84 91.9 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.83 91.4 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.83 91.4 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
455.4 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
413.3 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
396.4 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
387.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
386.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
371.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
348.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
328.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
318.1 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
300.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e+0 30 At5g40710 834071 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF C.G. S.X.
0.02 4e+0 30 At5g58000 835911 - F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVB C.G. S.X.
0.02 4e+0 30 At4g15110 827177 CYP97B3 member of CYP97B C.G. S.X.
0.02 4e+0 30 At3g20770 821625 EIN3 (ETHYLENE-INSENSITIVE3) ethylene-insensitive3 C.G. S.X.
0.02 4e+0 30 At3g07940 819985 zinc finger and C2 domain protein, putative F:ARF GTPase activator activity, zinc ion binding;P:regulation of ARF GTPase activity;C:cellular_component unknown;MPFO C.G. S.X.
0.03 4e+0 30 At2g21990 816735 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 4e+0 30 At1g66960 843014 lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative F:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFM C.G. S.X.
0.01 4e+0 30 At1g78500 844186 pentacyclic triterpene synthase, putative Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin. C.G. S.X.
0.02 4e+0 30 At1g47500 841159 ATRBP47C' (RNA-binding protein 47C') F:RNA binding;P:unknown;C:unknown;MPFOBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e+0 30 Glycine max GmaAffx.90856.1.S1_at CF806581 - - 8e-1 At4g04930 DES-1-LIKE C.G. S.X.
0.04 7e+0 28 Hordeum vulgare Contig17717_at Contig17717 - - 1e+0 At3g23190 lesion inducing protein-related C.G. S.X.
0.09 2e+0 32 Oryza sativa Os08g0161200 NM_189085.1 - - 2e+0 At3g16432 unknown protein C.G. S.X.
0.07 1e+0 32 Populus trichocarpa PtpAffx.223234.1.S1_at pmrna41120 hypothetical protein - 3e+0 At4g21950 unknown protein C.G. S.X.
0.05 6e-2 36 Triticum aestivum TaAffx.128712.13.S1_at CA628082 Photosystem II CP43 chlorophyll apoprotein - 3e-1 At4g21950 unknown protein C.G. S.X.
0.05 1e+0 30 Vitis vinifera 1611681_at CF513131 hypothetical protein LOC100241604 - 4e+0 At5g39360 EDL2 (EID1-like 2) C.G. S.X.
0.03 2e+0 30 Zea mays Zm.17668.1.A1_at CK369650 - - 2e+0 At4g30097 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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