Gene omics information

Query gene ID At4g21600
Gene name ENDO5 (endonuclease 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).S.X.H.G.
0.8693.1At5g44380834464FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAMS.X.H.G.
0.7586.9At1g69810843317WRKY36member of WRKY Transcription Factor; Group II-bS.X.H.G.
0.7586.9At2g14100815896CYP705A13a member of the cytochrome P450 familyS.X.H.G.
0.6075.7At5g17330831599GADEncodes one of two isoforms of glutamate decarboxylase.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
29.799.7GSM226542L12SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
29.699.7GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
25.899.7GSM157314Hammond_3-4_Control-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
25.499.6GSM266664Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.499.6GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
25.199.6GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
25.099.6GSM157323Hammond_3-16_Control-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
22.799.6GSM134514Col-0_4day_dark_-lincomycin_rep2GSE5759red illumination w/o lincomycin
20.599.6GSM265412Arabidopsis, whole roots, -Fe, replicate 2GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.820702At4g21585828244ENDO4 (endonuclease 4)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.C.G.S.X.
0.788e-157553At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.C.G.S.X.
0.042e-344At1g11190837660BFN1 (BIFUNCTIONAL NUCLEASE I)Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).C.G.S.X.
0.014e-136At4g02560827904LD (luminidependens)Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.C.G.S.X.
0.022e+034At4g23890828489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMFC.G.S.X.
0.012e+034At3g07660819957unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.012e+034At2g13560815842malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFAC.G.S.X.
0.012e+034At2g02090814740ETL1F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.174e-1169Glycine maxGmaAffx.21948.1.S1_atAW704894--2e-11At4g21600ENDO5 (endonuclease 5)C.G.S.X.
0.033e+032Hordeum vulgareContig6590_atContig6590--8e-3At1g21410SKP2AC.G.S.X.
0.012e-138Oryza sativaOs12g0228400AK120234.1-Chaperonin CPN60-1, mitochondrial precursor(HSP60-1)3e-2At3g23990HSP60 (HEAT SHOCK PROTEIN 60)C.G.S.X.
0.137e-1375Populus trichocarpaPtpAffx.209714.1.S1_atpmrna19175hypothetical protein-9e-13At4g21600ENDO5 (endonuclease 5)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.92983.1.S1_atBJ237288--1e-46Atmg00580-C.G.S.X.
0.112e-961Vitis vinifera1612965_atCF518997hypothetical protein LOC100265776-3e-19At4g21585ENDO4 (endonuclease 4)C.G.S.X.
0.033e+032Zea maysZm.9917.1.A1_atBM331863ribosomal protein L32 containing protein-1e+0At1g69485structural constituent of ribosomeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006308The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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