CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g21590

Gene name ENDO3 (endonuclease 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g21590 828245 ENDO3 (endonuclease 3) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development. S.X. H.G.
0.75 86.9 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. S.X. H.G.
0.75 86.9 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. S.X. H.G.
0.67 81.6 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
253.1 100.0 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
209.4 100.0 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
193.4 100.0 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
146.1 99.9 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
138.0 99.9 GSM10445 WT 24-Hr Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
108.1 99.9 GSM10478 lec1-1 24-Hr Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
71.1 99.9 E-MEXP-1246-raw-cel-1504120171
61.1 99.8 E-MEXP-1246-raw-cel-1504120231
57.8 99.8 E-MEXP-1246-raw-cel-1504120201
48.5 99.8 E-MEXP-1246-raw-cel-1504120291
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 8e-157 553 At4g21600 828246 ENDO5 (endonuclease 5) Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops). C.G. S.X.
0.78 2e-120 432 At4g21585 828244 ENDO4 (endonuclease 4) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. C.G. S.X.
0.03 3e-2 40 At1g68290 843158 ENDO 2 (endonuclease 2) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. C.G. S.X.
0.02 4e-1 36 At2g20280 816547 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 4e-1 36 At2g02090 814740 ETL1 F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA C.G. S.X.
0.02 2e+0 34 At3g26760 822289 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.01 2e+0 34 At1g16870 838258 mitochondrial 28S ribosomal protein S29-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP C.G. S.X.
0.04 2e+0 34 At1g11190 837660 BFN1 (BIFUNCTIONAL NUCLEASE I) Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-2 40 Glycine max GmaAffx.53531.1.S1_at BE347970 - - 1e-2 At4g21590 ENDO3 (endonuclease 3) C.G. S.X.
0.03 8e-1 34 Hordeum vulgare EBpi01_SQ004_O10_at EBpi01_SQ004_O10 - - 1e+0 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.31980.1.S1_at - - - 0 C.G. S.X.
0.04 2e-3 44 Populus trichocarpa PtpAffx.63072.1.A1_at CV255630 hypothetical protein - 7e-21 At1g68290 ENDO 2 (endonuclease 2) C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.76969.2.S1_at CA642080 - - 1e+0 At2g14460 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1619923_at CF204132.1 - - 3e-32 At3g23490 CYN (CYANASE) C.G. S.X.
0.03 7e-1 34 Zea mays Zm.906.1.S1_at BF728599 - - 9e-2 At5g38400 unknown protein C.G. S.X.
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Biological processes

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ECC GO ID Process Name
C GO:0006308 The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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