CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g21390

Gene name B120

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.97 97.6 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.63 78.1 At2g22880 816819 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.45 58.3 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
0.44 57.2 At2g38470 818429 WRKY33 Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. S.X. H.G.
0.39 48.4 At4g28085 828924 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.39 48.4 At2g26530 817194 AR781 unknown function S.X. H.G.
0.36 43.6 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family S.X. H.G.
0.36 43.6 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.34 39.8 At4g17615 827481 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation. S.X. H.G.
0.33 38.1 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
206.8 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
188.1 100.0 E-MEXP-807-raw-cel-1173272948
186.3 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
168.5 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
156.1 99.9 E-MEXP-1443-raw-cel-1581869863
144.7 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
141.2 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
139.2 99.9 E-MEXP-1443-raw-cel-1581869921
119.1 99.9 E-MEXP-807-raw-cel-1173273170
66.9 99.8 E-MEXP-807-raw-cel-1173273223
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 1e-19 99 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. C.G. S.X.
0.07 2e-12 75 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.05 2e-11 71 At1g65790 842890 ARK1 (A. THALIANA RECEPTOR KINASE 1) An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. C.G. S.X.
0.05 2e-11 71 At1g65800 842891 ARK2 (A. THALIANA RECEPTOR KINASE 2) encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures. C.G. S.X.
0.05 6e-9 63 At4g21410 827893 protein kinase family protein F:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
0.07 9e-8 59 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. C.G. S.X.
0.07 3e-7 57 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.10 3e-7 57 At1g61610 842457 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 1e-6 56 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-6 54 Glycine max GmaAffx.24407.1.S1_at BF071319 - - 1e-10 At1g11330 S-locus lectin protein kinase family protein C.G. S.X.
0.07 3e-9 63 Hordeum vulgare Contig21140_at Contig21140 - - 1e-7 At4g27300 S-locus protein kinase, putative C.G. S.X.
0.07 3e-12 75 Oryza sativa OsAffx.30177.3.S1_at - - - 0 C.G. S.X.
0.11 2e-12 75 Populus trichocarpa PtpAffx.224722.1.S1_at pmrna43534 hypothetical protein - 1e-12 At4g21390 B120 C.G. S.X.
0.04 3e-1 38 Triticum aestivum Ta.26313.1.A1_at CD490651 - - 9e-2 At4g21390 B120 C.G. S.X.
0.03 3e-8 59 Vitis vinifera 1611358_at CD006705 - - 9e-8 At1g61370 S-locus lectin protein kinase family protein C.G. S.X.
0.06 6e-13 75 Zea mays Zm.16280.1.A1_at CO527119 receptor-like kinase - 4e-13 At4g21390 B120 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0048544 The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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