CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g21120

Gene name AAT1 (AMINO ACID TRANSPORTER 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At4g21120 827860 AAT1 (AMINO ACID TRANSPORTER 1) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. S.X. H.G.
0.44 57.2 At2g42360 818837 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.40 50.8 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.36 43.6 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.26 24.4 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
330.1 100.0 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
204.0 100.0 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
113.3 99.9 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
90.7 99.9 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
90.2 99.9 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
84.9 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
77.0 99.9 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
67.8 99.9 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
64.6 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
63.2 99.8 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e-6 54 At3g10600 820229 CAT7 (CATIONIC AMINO ACID TRANSPORTER 7) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. C.G. S.X.
0.01 2e-1 38 At5g32613 833244 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;PFV C.G. S.X.
0.01 9e-1 36 At5g17790 831647 VAR3 (VARIEGATED 3) Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. C.G. S.X.
0.01 9e-1 36 At5g04060 830285 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;PBOFM C.G. S.X.
0.01 9e-1 36 At5g65750 836704 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding;P:response to cadmium ion;C:mitochondrion;OBMFPA C.G. S.X.
0.01 9e-1 36 At3g20480 821594 tetraacyldisaccharide 4'-kinase family protein F:tetraacyldisaccharide 4'-kinase activity;P:lipid A biosynthetic process;C:membrane;OBPM C.G. S.X.
0.02 9e-1 36 At2g04520 814994 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;OMAFP C.G. S.X.
0.01 9e-1 36 At1g62280 842525 SLAH1 (SLAC1 HOMOLOGUE 1) Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane. C.G. S.X.
0.01 4e+0 34 At5g46710 834714 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.18182.1.S1_s_at BG652355 - - 8e-1 At4g32480 unknown protein C.G. S.X.
0.02 7e-3 42 Hordeum vulgare Contig21624_at Contig21624 - - 3e-1 At5g20370 serine-rich protein-related C.G. S.X.
0.06 6e-19 97 Oryza sativa OsAffx.25529.1.S1_at - - - 0 C.G. S.X.
0.25 9e-14 79 Populus trichocarpa PtpAffx.210950.1.S1_at pmrna21514 cationic amino acid transporter - 7e-14 At4g21120 AAT1 (AMINO ACID TRANSPORTER 1) C.G. S.X.
0.02 9e-1 36 Triticum aestivum Ta.12699.1.A1_at BQ166301 - - 5e+0 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1622418_at CF415510 hypothetical protein LOC100244541 - 6e-2 At1g19200 senescence-associated protein-related C.G. S.X.
0.02 6e+0 32 Zea mays Zm.6246.1.S1_a_at CB042879 hypothetical protein LOC100274295 /// hypothetical protein LOC100277252 - 1e-5 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043091 The directed movement of L-arginine, the L-enantiomer of 2-amino-5-guanidinopentanoic acid, into a cell or organelle.
X GO:0051938 The directed movement of L-glutamate, the L-enantiomer of the anion of 2-aminopentanedioic acid, into a cell or organelle.
X GO:0015802 The directed movement of basic amino acids, amino acids with a pH above 7, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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