Gene omics information

Query gene ID At4g21070
Gene name ATBRCA1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At4g21070827854ATBRCA1Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.S.X.H.G.
0.7083.5At1g35530840448DEAD/DEAH box helicase, putativeF:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.7083.5At5g22750832338RAD5DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transferS.X.H.G.
0.6882.2At2g45490819157AtAUR3 (ATAURORA3)Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.S.X.H.G.
0.6579.6At3g10180820180kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAVS.X.H.G.
0.6378.1At2g46040819212ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing proteinF:DNA binding;P:biological_process unknown;C:intracellular;PMOFS.X.H.G.
0.5570.6At5g25380832610CYCA2core cell cycle genesS.X.H.G.
0.5570.6At3g59550825124SYN3Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.S.X.H.G.
0.5368.6At3g16650820917PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2)F:nucleotide binding;P:response to salt stress;C:CUL4 RING ubiquitin ligase complex;MFOBPAS.X.H.G.
0.4963.5At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
711.2100.0GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
298.4100.0GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
213.9100.0E-ATMX-35-raw-cel-1574334832
213.6100.0GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
207.7100.0GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
176.0100.0GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
155.899.9GSM245913csn5 (csn5a-2 csn5b) mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
140.499.9GSM245910csn3-1 mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
135.699.9GSM245915csn5 (csn5a-2 csn5b) mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
132.399.9GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-240At5g28190832895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBVC.G.S.X.
0.011e+036At5g27400832799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBC.G.S.X.
0.011e+036At4g300643770558LCR61 (Low-molecular-weight cysteine-rich 61)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.C.G.S.X.
0.011e+036At4g30610829184BRS1 (BRI1 SUPPRESSOR 1)Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.C.G.S.X.
0.011e+036At3g56970824864BHLH038F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.011e+036At3g27640822386transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAC.G.S.X.
0.011e+036At3g46060823749ATRAB8Asmall GTP-binding protein (ara-3)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGma.16893.2.A1_atCD414604--3e+0At5g49050-C.G.S.X.
0.017e-136Hordeum vulgareContig7373_s_atContig7373--3e-1At2g32720CB5-B (CYTOCHROME B5 ISOFORM B)C.G.S.X.
0.043e-656Oryza sativaOs05g0512000AK102433.1-Zn-finger, RING domain containing protein2e-6At4g21070ATBRCA1C.G.S.X.
0.113e-861Populus trichocarpaPtpAffx.201253.1.S1_atpmrna2484hypothetical protein-3e-8At4g21070ATBRCA1C.G.S.X.
0.012e-242Triticum aestivumTa.13642.1.S1_a_atCD936064--1e+0At1g24010-C.G.S.X.
0.027e+032Vitis vinifera1621538_atCA809611hypothetical protein LOC100261262-4e-1At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeC.G.S.X.
0.012e+034Zea maysZmAffx.1201.1.A1_atBE128817--8e-1At2g18970unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010332A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
XGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage