CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g21020

Gene name late embryogenesis abundant domain-containing protein / LEA domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.88 94.0 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.85 92.4 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.84 91.9 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.83 91.4 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.80 89.8 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.80 89.8 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.79 89.1 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
459.7 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
405.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
403.4 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
393.3 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
382.9 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
354.9 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
316.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
263.0 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
260.6 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
217.8 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-10 65 At5g44310 834454 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV C.G. S.X.
0.02 3e-2 40 At5g37490 833727 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV C.G. S.X.
0.01 3e-2 40 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. C.G. S.X.
0.03 1e-1 38 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM C.G. S.X.
0.02 1e-1 38 At4g37120 829866 SMP2 Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size. C.G. S.X.
0.01 4e-1 36 At5g48570 834913 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPA C.G. S.X.
0.02 4e-1 36 At4g22190 828310 unknown protein F:unknown;P:unknown;C:unknown;OMPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max PsAffx.psHB020xA12f_s_at PsAffx.psHB020xA12f - - 2e+0 At3g23490 CYN (CYANASE) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare EBem09_SQ002_P17_s_at EBem09_SQ002_P17 glyceraldehyde 3-phosphate dehydrogenase - 2e-4 At5g45350 proline-rich family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os12g0557500 9640.m03595 - - 3e+0 At4g17850 - C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.221989.1.S1_at pmrna39156 hypothetical protein - 9e-54 At2g18290 anaphase-promoting complex, subunit 10 family / APC10 family C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.39299.1.S1_at BG909724 - - 2e+0 At5g23395 - C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1616755_at CF208317 - - 2e+0 At4g21020 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.03 7e-1 34 Zea mays Zm.11737.1.A1_at BM380357 - - 1e+0 At4g21020 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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