Gene omics information

Query gene ID At4g20850
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g20850827833TPP2 (TRIPEPTIDYL PEPTIDASE II)Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant.S.X.H.G.
0.5267.4At1g50200841442ALATS (ALANYL-TRNA SYNTHETASE)F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFPS.X.H.G.
0.5267.4At5g61140836235DEAD box RNA helicase, putativeEncodes a predicted protein with 30% identity with MER3/RCK.S.X.H.G.
0.5166.3At1g15750838144TPL (TOPLESS)Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.S.X.H.G.
0.5065.3At3g27670822389RST1 (RESURRECTION1)A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development.S.X.H.G.
0.5065.3At1g17210838292zinc ion bindingF:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBAS.X.H.G.
0.4963.5At5g42950834307GYF domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.4659.8At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.4558.3At1g54490841891XRN4 (EXORIBONUCLEASE 4)Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.S.X.H.G.
0.4558.3At3g06670819852bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.099.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
18.199.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
17.499.5GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
14.099.4GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
13.799.4GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.699.4GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
13.599.4GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-448At5g59270836045lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.018e-344At3g09770820135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;MPOFVBAC.G.S.X.
0.013e-242At5g22400832301rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular, chloroplast;MOFPC.G.S.X.
0.013e-242At1g54215841862proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.011e-140At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFC.G.S.X.
0.011e-140At5g22800832343EMB1030 (EMBRYO DEFECTIVE 1030)F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding;P:embryonic development ending in seed dormancy, alanyl-tRNA aminoacylation;C:mitochondrion, chloroplast stroma, chloroplast, membrane;OBMAFPC.G.S.X.
0.011e-140At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.C.G.S.X.
0.011e-140At1g49930841416-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-450Glycine maxGma.3549.2.S1_atBE802703--4e-5At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
0.013e-138Hordeum vulgareContig10845_atContig10845--6e-2At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
0.102e-20103Oryza sativaOs02g0664300AK103515.1-Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein1e-20At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
0.099e-1377Populus trichocarpaPtpAffx.73020.1.S1_atCX169841hypothetical protein-9e-14At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
0.083e-1585Triticum aestivumTa.6786.1.S1_atCA710317--2e-15At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
0.012e-138Vitis vinifera1609989_atCF415187--2e+1At4g08190Ras-related GTP-binding protein, putativeC.G.S.X.
0.024e-654Zea maysZm.6542.1.A1_atBG518200--4e-6At4g20850TPP2 (TRIPEPTIDYL PEPTIDASE II)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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