CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g20420

Gene name tapetum-specific protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
1.00 100.0 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
1.00 100.0 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
1.00 100.0 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
1.00 100.0 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
1.00 100.0 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.94 96.7 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV S.X. H.G.
0.94 96.7 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.94 96.7 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.94 96.7 At1g01280 839470 CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2) member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
448.5 100.0 E-MEXP-1592-raw-cel-1617526856
347.3 100.0 E-MEXP-1592-raw-cel-1617526984
330.8 100.0 E-MEXP-1592-raw-cel-1617526920
259.9 100.0 E-MEXP-1592-raw-cel-1617526824
243.9 100.0 E-MEXP-1592-raw-cel-1617526888
236.5 100.0 E-MEXP-1592-raw-cel-1617526952
186.4 100.0 E-MEXP-1592-raw-cel-1617526944
181.8 100.0 E-MEXP-1592-raw-cel-1617526848
164.7 100.0 E-MEXP-1592-raw-cel-1617526816
153.1 99.9 E-MEXP-1592-raw-cel-1617526880
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 9e-4 44 At2g43750 818978 OASB (O-ACETYLSERINE (THIOL) LYASE B) Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. C.G. S.X.
0.03 1e-2 40 At4g17270 827441 Mo25 family protein F:binding;P:biological_process unknown;C:plasma membrane;MFPO C.G. S.X.
0.02 2e-1 36 At5g44370 834463 PHT4 Encodes an inorganic phosphate transporter (PHT4;6). C.G. S.X.
0.03 2e-1 36 At4g18070 827532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 2e-1 36 At2g38800 818462 calmodulin-binding protein-related F:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
0.04 2e-1 36 At2g04910 815038 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 Glycine max GmaAffx.90612.1.S1_s_at CF806337 - - 2e-14 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) C.G. S.X.
0.06 3e-2 38 Hordeum vulgare Contig22852_at Contig22852 - - 6e-1 At5g24250 unknown protein C.G. S.X.
0.05 4e-1 36 Oryza sativa Os02g0244000 9630.m01370 - Hypothetical protein 1e-1 At4g20420 tapetum-specific protein-related C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.202763.1.S1_at pmrna5508 hypothetical protein - 2e-1 At2g37600 60S ribosomal protein L36 (RPL36A) C.G. S.X.
0.07 6e-2 38 Triticum aestivum TaAffx.58914.1.S1_at BQ161595 - - 5e-2 At4g20420 tapetum-specific protein-related C.G. S.X.
0.06 1e+0 32 Vitis vinifera 1621294_at CB003395 - - 3e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 9e-2 36 Zea mays Zm.6449.1.A1_at CK370615 - - 2e+0 At2g28725 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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