CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g20240

Gene name CYP71A27

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g20240 827771 CYP71A27 putative cytochrome P450 S.X. H.G.
0.49 63.5 At3g30400 3769078 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.46 59.8 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.44 57.2 At2g23945 816927 chloroplast nucleoid DNA-binding protein-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOF S.X. H.G.
0.43 55.3 At3g45460 823686 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.42 53.9 At1g60930 842384 ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B) AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination. S.X. H.G.
0.40 50.8 At3g20475 821593 MSH5 (MUTS-HOMOLOGUE 5) Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. S.X. H.G.
0.39 48.4 At3g31430 822909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.39 48.4 At5g28790 832995 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.38 46.7 At4g22940 828393 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
574.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
345.4 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
311.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
269.0 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
223.4 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
215.4 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
180.3 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
156.0 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
147.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 2e-29 131 At5g24950 832565 CYP71A15 putative cytochrome P450 C.G. S.X.
0.24 2e-28 127 At1g11610 837705 CYP71A18 putative cytochrome P450 C.G. S.X.
0.22 1e-26 121 At4g13290 826959 CYP71A19 putative cytochrome P450 C.G. S.X.
0.29 6e-26 119 At5g24960 832566 CYP71A14 putative cytochrome P450 C.G. S.X.
0.25 6e-26 119 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 C.G. S.X.
0.36 9e-22 105 At5g42590 834266 CYP71A16 putative cytochrome P450 C.G. S.X.
0.33 9e-22 105 At4g13310 826961 CYP71A20 putative cytochrome P450 C.G. S.X.
0.22 1e-20 101 At2g30770 817628 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13) putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max GmaAffx.91915.1.S1_at CF807640 - - 4e-3 At3g03470 CYP89A9 C.G. S.X.
0.02 5e+0 32 Hordeum vulgare EBro02_SQ005_L23_at EBro02_SQ005_L23 - - 1e-3 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.02 3e-1 38 Oryza sativa Os02g0601400 9630.m03746 - E-class P450, group I family protein 2e-1 At4g13310 CYP71A20 C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.133632.2.A1_at CV268745 cytochrome P450 - 1e-9 At3g48310 CYP71A22 C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.23778.2.S1_a_at BJ275521 - - 1e-3 At5g63550 - C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1619731_at CB972437 hypothetical protein LOC100241741 - 1e+0 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.228.1.A1_at AI670240 - - 5e-2 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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