Gene omics information

Query gene ID At4g19690
Gene name IRT1 (iron-regulated transporter 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)S.X.H.G.
1.00100.0At4g31940829324CYP82C4member of CYP82CS.X.H.G.
0.8994.6At1g74770843816protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBS.X.H.G.
0.8089.8At3g58810825050MTPA2 (METAL TOLERANCE PROTEIN A2)Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.S.X.H.G.
0.7586.9At1g74760---S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
170.3100.0GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
152.199.9GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
121.799.9GSM265470Arabidopsis, whole roots, -Fe, 24 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
100.799.9GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
98.799.9E-MEXP-635-raw-cel-912819824
89.799.9GSM265467Arabidopsis, whole roots, -Fe, 12 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
85.699.9GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
84.099.9GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
83.399.9E-MEXP-635-raw-cel-912819840
79.999.9GSM265469Arabidopsis, whole roots, -Fe, 24 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.282e-27123At5g45105834544ZIP8 (ZINC TRANSPORTER 8 PRECURSOR)F:cation transmembrane transporter activity;P:cation transport;C:endomembrane system, integral to membrane, membrane;FPOMBC.G.S.X.
0.357e-27121At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.C.G.S.X.
0.119e-857At1g31260840014ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)member of Fe(II) transporter isolog familyC.G.S.X.
0.015e-342At4g28470828964RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)encoding the RPN subunits of the 26S proteasomeC.G.S.X.
0.025e-342At3g58810825050MTPA2 (METAL TOLERANCE PROTEIN A2)Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.C.G.S.X.
0.042e-240At2g04032814931ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOBC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.17657.1.S1_atCB825654--1e+0At4g19690IRT1 (iron-regulated transporter 1)C.G.S.X.
0.036e-134Hordeum vulgareContig17639_atContig17639--9e-1At1g12423unknown proteinC.G.S.X.
0.032e+034Oryza sativaOs.27930.1.A1_at---0C.G.S.X.
0.043e-240Populus trichocarpaPtpAffx.15674.1.S1_atBI126540--2e-4At3g63095-C.G.S.X.
0.031e+034Triticum aestivumTaAffx.26376.1.S1_atCA689440--8e-1At2g24590splicing factor, putativeC.G.S.X.
0.042e-238Vitis vinifera1619216_atCB349803similar to sterol 22-desaturase-2e-1At5g45350proline-rich family proteinC.G.S.X.
0.025e-134Zea maysZm.6093.2.S1_atCD440434translocon-associated protein beta containing protein-6e-1At5g14030translocon-associated protein beta (TRAPB) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
XGO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
SGO:0006826The directed movement of iron (Fe) ions into, out of, within or between cells.
SGO:0006828The directed movement of manganese (Mn) ions into, out of, within or between cells.
SGO:0006829The directed movement of zinc (Zn) ions into, out of, within or between cells.
SGO:0015691The directed movement of cadmium (Cd) ions into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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