CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19390

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA S.X. H.G.
0.33 38.1 At1g22370 838844 AtUGT85A5 (UDP-glucosyl transferase 85A5) F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOF S.X. H.G.
0.20 14.4 At1g30500 839929 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO S.X. H.G.
0.07 1.9 At1g28230 839717 PUP1 (PURINE PERMEASE 1) Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. S.X. H.G.
0.07 1.9 At1g76590 843992 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
279.3 100.0 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
106.0 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
100.4 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
94.8 99.9 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
82.1 99.9 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
74.8 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
74.5 99.9 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
67.9 99.9 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
66.6 99.8 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
66.0 99.8 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.00 4e-1 36 At2g17930 816303 binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor F:inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:unknown;MFOP C.G. S.X.
0.02 2e+0 34 At5g24930 832563 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular, chloroplast;POM C.G. S.X.
0.02 2e+0 34 At4g27790 828892 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB C.G. S.X.
0.01 6e+0 32 Atcg01130 - - hypothetical protein C.G. S.X.
0.01 6e+0 32 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.01 6e+0 32 At5g58000 835911 - F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVB C.G. S.X.
0.01 6e+0 32 At4g17740 827495 C-terminal processing protease, putative F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen;OBPM C.G. S.X.
0.01 6e+0 32 At4g20160 827762 - F:unknown;P:unknown;C:chloroplast;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.29226.1.S1_at BU965444 - - 9e-1 At1g10990 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig11997_at Contig11997 - - 1e+0 At4g19390 - C.G. S.X.
0.02 3e+0 34 Oryza sativa Os03g0797800 AK059619.1 - AUX/IAA protein family protein 1e-1 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) C.G. S.X.
0.07 6e-4 46 Populus trichocarpa PtpAffx.1601.19.S1_at CV276738 hypothetical protein - 5e-4 At4g19390 - C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.113441.1.S1_at CA612309 - - 4e+0 At3g50450 HR1 (HOMOLOG OF RPW8 1) C.G. S.X.
0.08 3e-8 57 Vitis vinifera 1619752_at BQ797745 hypothetical protein LOC100266665 - 8e-8 At4g19390 - C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.1168.1.S1_s_at AW600602 early fruit mRNA - 2e-1 At5g16380 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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