CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19370

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At4g19370 827678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.29 30.3 At4g33450 829482 MYB69 (MYB DOMAIN PROTEIN 69) Member of the R2R3 factor gene family. S.X. H.G.
0.22 17.5 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO S.X. H.G.
0.17 10.2 At4g00940 827952 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
191.7 100.0 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
169.1 100.0 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
128.7 99.9 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
128.5 99.9 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
123.9 99.9 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
113.7 99.9 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
112.1 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
110.4 99.9 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
109.6 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
101.2 99.9 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-3 42 At3g60580 825229 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOF C.G. S.X.
0.02 1e+0 34 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO C.G. S.X.
0.02 1e+0 34 At5g61390 836260 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP C.G. S.X.
0.01 1e+0 34 At4g19380 827679 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPA C.G. S.X.
0.01 1e+0 34 At3g59550 825124 SYN3 Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes. C.G. S.X.
0.02 1e+0 34 At2g43945 818999 unknown protein F:unknown;P:unknown;C:chloroplast;OBP C.G. S.X.
0.01 1e+0 34 At1g12280 837782 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.01 1e+0 34 At1g61390 842433 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA C.G. S.X.
0.02 1e+0 34 At1g66250 842942 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.92276.1.S1_at CF808001 - - 3e-1 At4g19370 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBem09_SQ004_B23_s_at EBem09_SQ004_B23 - - 2e+0 At4g15750 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.24913.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa Ptp.6871.1.S1_at BU830941 hypothetical protein - 1e+0 At4g34190 SEP1 (STRESS ENHANCED PROTEIN 1) C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.53968.1.S1_at CA687263 - - 3e+0 At2g03110 RNA binding / nucleic acid binding C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619371_at CA809340 beta-carotene hydroxylase - 8e-20 At4g25700 BETA-OHASE 1 (BETA-HYDROXYLASE 1) C.G. S.X.
0.02 5e-1 34 Zea mays Zm.8032.1.A1_at AI737866 acyl-CoA synthetase long-chain family member 3 - 2e-14 At2g04350 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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