CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19230

Gene name CYP707A1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g19230 827663 CYP707A1 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy. S.X. H.G.
0.24 20.7 At3g54680 824633 proteophosphoglycan-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA S.X. H.G.
0.23 19.3 At3g11420 820315 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MFPO S.X. H.G.
0.22 17.5 At5g52510 835327 scarecrow-like transcription factor 8 (SCL8) F:transcription factor activity;P:regulation of transcription;C:nucleus, cytoplasm;POFMB S.X. H.G.
0.12 4.9 At4g22820 828381 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVAF S.X. H.G.
0.12 4.9 At3g03050 821148 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. S.X. H.G.
0.11 4.1 At1g71960 843527 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV S.X. H.G.
0.11 4.1 At3g17810 821049 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein F:oxidoreductase activity, acting on the CH-CH group of donors, catalytic activity, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity;P:'de novo' pyrimidine base biosynthetic process, UMP biosynthetic process, metabolic process;C:chloroplast;BOMAFP S.X. H.G.
0.10 3.4 At4g30960 829221 SIP3 (SOS3-INTERACTING PROTEIN 3) Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. S.X. H.G.
0.08 2.3 At4g24400 828542 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.4 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
69.0 99.9 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
57.4 99.8 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
52.0 99.8 GSM242961 Mock day 7 (day7E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
47.6 99.8 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
47.2 99.8 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.0 99.8 E-MEXP-475-raw-cel-680982449
46.7 99.8 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
44.5 99.8 GSM142855 MG001_ATH1_A8-Torres-3N3 GSE6176 Impact of Type III effectors on plant defense responses
44.3 99.8 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 904 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). C.G. S.X.
0.05 2e-10 67 At3g19270 821461 CYP707A4 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. C.G. S.X.
0.06 1e-5 52 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. C.G. S.X.
0.02 4e-2 40 At2g15670 816060 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At3g58980 825067 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 7e-1 36 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.01 7e-1 36 At3g01160 820504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-9 65 Glycine max GmaAffx.82642.5.S1_at AI966688 abscisic acid 8'-hydroxylase - 2e-10 At4g19230 CYP707A1 C.G. S.X.
0.05 9e-2 38 Hordeum vulgare Contig11708_at Contig11708 - - 1e-1 At4g19230 CYP707A1 C.G. S.X.
0.06 2e-2 42 Oryza sativa Os02g0703600 AK067007.1 - Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3) 2e-2 At4g19230 CYP707A1 C.G. S.X.
0.47 2e-39 165 Populus trichocarpa PtpAffx.223327.1.S1_at pmrna41264 hypothetical protein - 1e-39 At4g19230 CYP707A1 C.G. S.X.
0.08 3e-6 54 Triticum aestivum Ta.22981.3.S1_a_at BJ291883 - - 1e-6 At4g19230 CYP707A1 C.G. S.X.
0.13 1e-21 103 Vitis vinifera 1621989_at CD006576 - - 3e-21 At4g19230 CYP707A1 C.G. S.X.
0.04 8e-8 57 Zea mays Zm.7780.1.A1_at CD433445 hypothetical protein LOC100274595 - 1e-7 At4g19230 CYP707A1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0009639 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
X GO:0009687 The chemical reactions and pathways involving abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
X GO:0048838 The process by which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00906 Carotenoid biosynthesis
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