CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19200

Gene name proline-rich family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g19200 827660 proline-rich family protein F:unknown;P:unknown;C:unknown;MBPFOVA S.X. H.G.
0.58 73.8 At2g01540 814683 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MPFO S.X. H.G.
0.55 70.6 At1g73030 843634 VPS46.2 F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFO S.X. H.G.
0.53 68.6 At5g55850 835679 NOI NOI protein S.X. H.G.
0.52 67.4 At3g12630 820443 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF S.X. H.G.
0.45 58.3 At2g04410 814981 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO S.X. H.G.
0.45 58.3 At1g65720 842883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.44 57.2 At1g69640 843300 SBH1 (SPHINGOID BASE HYDROXYLASE 1) Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. S.X. H.G.
0.44 57.2 At5g45550 834591 mob1/phocein family protein F:protein binding;P:biological_process unknown;C:nucleus;MFOP S.X. H.G.
0.44 57.2 At3g52800 824446 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:response to chitin;C:cellular_component unknown;MPOVF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.4 99.8 GSM157318 Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
45.9 99.8 GSM157312 Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
27.9 99.7 GSM157321 Hammond_3-14_Potassium-starved-shoot_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
20.2 99.6 E-MEXP-98-raw-cel-320188859
19.6 99.6 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.5 99.5 E-MEXP-98-raw-cel-320189024
18.1 99.5 E-MEXP-98-raw-cel-320188804
16.0 99.5 E-MEXP-98-raw-cel-320189079
15.7 99.5 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.5 99.4 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 4e-6 52 At5g45350 834571 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBFOVA C.G. S.X.
0.10 4e-3 42 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA C.G. S.X.
0.06 7e-2 38 At1g31750 840062 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.03 7e-2 38 At1g53120 841746 RNA-binding S4 domain-containing protein F:RNA binding;P:biological_process unknown;C:chloroplast;BOPM C.G. S.X.
0.04 3e-1 36 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP C.G. S.X.
0.01 3e-1 36 At1g26730 839214 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB C.G. S.X.
0.01 1e+0 34 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB C.G. S.X.
0.04 1e+0 34 At3g57160 824883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-3 42 Glycine max GmaAffx.4451.1.S1_at AW100961 - - 7e-3 At4g19200 proline-rich family protein C.G. S.X.
0.14 2e-6 52 Hordeum vulgare Contig306_s_at Contig306 - - 9e-6 At4g19200 proline-rich family protein C.G. S.X.
0.03 3e-2 40 Oryza sativa Os05g0119300 AK068289.1 - Molluscan rhodopsin C-terminal tail family protein 5e-3 At5g45350 proline-rich family protein C.G. S.X.
0.13 4e-4 46 Populus trichocarpa Ptp.1463.3.A1_s_at CV263405 hypothetical protein - 1e-4 At4g19200 proline-rich family protein C.G. S.X.
0.14 5e-6 52 Triticum aestivum TaAffx.113630.1.S1_at CA608218 - - 8e-4 At5g45350 proline-rich family protein C.G. S.X.
0.06 5e-3 40 Vitis vinifera 1612495_at CF415125 hypothetical protein LOC100254598 - 1e-13 At5g45350 proline-rich family protein C.G. S.X.
0.07 1e-1 36 Zea mays Zm.3670.3.S1_at CK827983 glycine-rich protein A3 - 4e-5 At5g45350 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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