Gene omics information

Query gene ID At4g19130
Gene name DNA binding / nucleic acid binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g19130827651DNA binding / nucleic acid binding / zinc ion bindingF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFAS.X.H.G.
0.4050.8At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .S.X.H.G.
0.3338.1At5g48720834930XRI1 (X-RAY INDUCED TRANSCRIPT 1)Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.S.X.H.G.
0.103.4At2g38620818444CDKB1Encodes a member of a plant specific family of cyclin dependent kinases.S.X.H.G.
0.082.3At1g66040842917VIM4 (VARIANT IN METHYLATION 4)predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
155.499.9GSM245912csn3-1 mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
146.299.9GSM245920csn3-1 mutant dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
139.699.9GSM245915csn5 (csn5a-2 csn5b) mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
139.199.9GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
122.199.9GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
96.599.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
95.899.9GSM245919csn3-1 mutant dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
91.099.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
87.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
83.799.9GSM245910csn3-1 mutant light replicate 1GSE9728COP9 signalosome (csn) mutant analysis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.437e-101369At5g45400834576replication protein, putativeF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPFOABC.G.S.X.
0.013e-138At5g36950833665DegP10 (DegP protease 10)Encodes a putative DegP protease.C.G.S.X.
0.011e+036At4g12570826870UPL5 (UBIQUITIN PROTEIN LIGASE 5)F:ubiquitin-protein ligase activity, binding, acid-amino acid ligase activity;P:protein modification process;C:intracellular;MOPFVBC.G.S.X.
0.011e+036At3g16010820846pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.001e+036At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.C.G.S.X.
0.015e+034At5g34883833426unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.015e+034At5g34885833427unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.015e+034At5g04500830329glycosyltransferase family protein 47a member of the Glycosyltransferase Family 64 (according to CAZy Database)C.G.S.X.
0.015e+034At5g65780836707ATBCAT-5encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutantC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e+034Glycine maxHgAffx.12256.1.S1_atCB375726--2e-1At3g43520unknown proteinC.G.S.X.
0.059e-342Hordeum vulgareContig24326_atContig24326--7e-3At4g19130DNA binding / nucleic acid binding / zinc ion bindingC.G.S.X.
0.057e-1377Oryza sativaOs02g0776800AB042415.1-Replication protein A 70kDa3e-17At2g06510RPA1A (REPLICATION PROTEIN A 1A)C.G.S.X.
0.174e-26121Populus trichocarpaPtpAffx.34318.1.S1_atDN499770hypothetical protein-9e-27At4g19130DNA binding / nucleic acid binding / zinc ion bindingC.G.S.X.
0.052e-242Triticum aestivumTa.23702.1.A1_atBJ228174--8e-3At4g19130DNA binding / nucleic acid binding / zinc ion bindingC.G.S.X.
0.011e+034Vitis vinifera1615301_atCF373109hypothetical protein LOC100242686-1e+0At2g03822unknown proteinC.G.S.X.
0.021e-757Zea maysZm.10283.1.A1_atCK985796DNA binding protein-2e-6At5g45400replication protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03030Link to KEGG PATHWAYDNA replication
03420Link to KEGG PATHWAYNucleotide excision repair
03430Link to KEGG PATHWAYMismatch repair
03440Link to KEGG PATHWAYHomologous recombination
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