CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19130

Gene name DNA binding / nucleic acid binding / zinc ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g19130 827651 DNA binding / nucleic acid binding / zinc ion binding F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA S.X. H.G.
0.40 50.8 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . S.X. H.G.
0.33 38.1 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. S.X. H.G.
0.10 3.4 At2g38620 818444 CDKB1 Encodes a member of a plant specific family of cyclin dependent kinases. S.X. H.G.
0.08 2.3 At1g66040 842917 VIM4 (VARIANT IN METHYLATION 4) predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
155.4 99.9 GSM245912 csn3-1 mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
146.2 99.9 GSM245920 csn3-1 mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
139.6 99.9 GSM245915 csn5 (csn5a-2 csn5b) mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
139.1 99.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
122.1 99.9 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
96.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
95.8 99.9 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
91.0 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.7 99.9 GSM245910 csn3-1 mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 7e-101 369 At5g45400 834576 replication protein, putative F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPFOAB C.G. S.X.
0.01 3e-1 38 At5g36950 833665 DegP10 (DegP protease 10) Encodes a putative DegP protease. C.G. S.X.
0.01 1e+0 36 At4g12570 826870 UPL5 (UBIQUITIN PROTEIN LIGASE 5) F:ubiquitin-protein ligase activity, binding, acid-amino acid ligase activity;P:protein modification process;C:intracellular;MOPFVB C.G. S.X.
0.01 1e+0 36 At3g16010 820846 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.00 1e+0 36 At2g35630 818131 MOR1 (MICROTUBULE ORGANIZATION 1) Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. C.G. S.X.
0.01 5e+0 34 At5g34883 833426 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e+0 34 At5g34885 833427 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e+0 34 At5g04500 830329 glycosyltransferase family protein 47 a member of the Glycosyltransferase Family 64 (according to CAZy Database) C.G. S.X.
0.01 5e+0 34 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e+0 34 Glycine max HgAffx.12256.1.S1_at CB375726 - - 2e-1 At3g43520 unknown protein C.G. S.X.
0.05 9e-3 42 Hordeum vulgare Contig24326_at Contig24326 - - 7e-3 At4g19130 DNA binding / nucleic acid binding / zinc ion binding C.G. S.X.
0.05 7e-13 77 Oryza sativa Os02g0776800 AB042415.1 - Replication protein A 70kDa 3e-17 At2g06510 RPA1A (REPLICATION PROTEIN A 1A) C.G. S.X.
0.17 4e-26 121 Populus trichocarpa PtpAffx.34318.1.S1_at DN499770 hypothetical protein - 9e-27 At4g19130 DNA binding / nucleic acid binding / zinc ion binding C.G. S.X.
0.05 2e-2 42 Triticum aestivum Ta.23702.1.A1_at BJ228174 - - 8e-3 At4g19130 DNA binding / nucleic acid binding / zinc ion binding C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1615301_at CF373109 hypothetical protein LOC100242686 - 1e+0 At2g03822 unknown protein C.G. S.X.
0.02 1e-7 57 Zea mays Zm.10283.1.A1_at CK985796 DNA binding protein - 2e-6 At5g45400 replication protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03030 DNA replication
03420 Nucleotide excision repair
03430 Mismatch repair
03440 Homologous recombination
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