CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g19030

Gene name NLM1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. S.X. H.G.
0.89 94.6 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. S.X. H.G.
0.82 90.9 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM S.X. H.G.
0.75 86.9 At4g37400 829894 CYP81F3 member of CYP81F S.X. H.G.
0.74 86.1 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA S.X. H.G.
0.71 84.2 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family S.X. H.G.
0.63 78.1 At2g24300 816966 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:unknown;PB S.X. H.G.
0.61 76.7 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.59 74.7 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase S.X. H.G.
0.57 73.8 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.2 100.0 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
105.8 99.9 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
91.7 99.9 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
82.6 99.9 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
65.7 99.8 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
62.5 99.8 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
59.7 99.8 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
57.8 99.8 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
53.7 99.8 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
53.4 99.8 GSM265416 Arabidopsis, root cells, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 0 682 At4g18910 827626 NIP1 Encodes an aquaporin homolog. Functions in arsenite transport and tolerance. C.G. S.X.
0.12 2e-9 63 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA C.G. S.X.
0.09 5e-7 56 At2g34390 818002 NIP2 aquaporin NIP2.1 C.G. S.X.
0.04 5e-4 46 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. C.G. S.X.
0.01 4e-1 36 At5g55770 835671 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PMO C.G. S.X.
0.02 2e+0 34 At5g24480 832519 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P C.G. S.X.
0.01 2e+0 34 At4g20830 827831 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM C.G. S.X.
0.02 2e+0 34 At3g23730 821955 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-6 54 Glycine max Gma.15715.1.S1_at CD403744 - - 1e-14 At4g18910 NIP1 C.G. S.X.
0.03 1e+1 30 Hordeum vulgare S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.9004.1.S1_at - - - 0 C.G. S.X.
0.11 4e-5 50 Populus trichocarpa PtpAffx.11491.2.A1_a_at CV262838 hypothetical protein - 1e-5 At4g18910 NIP1 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.84130.1.S1_at CA644137 - - 5e-1 At4g19030 NLM1 C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1608955_at CF209812 hypothetical protein LOC100254904 - 6e-2 At4g28570 alcohol oxidase-related C.G. S.X.
0.02 3e+0 32 Zea mays Zm.4734.1.A1_at AI738340 - - 2e+0 At1g75810 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015700 The directed movement of arsenite into, out of, within or between cells.
X GO:0046685 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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