CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18920

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.95 97.0 At4g10440 826636 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOA S.X. H.G.
0.95 97.0 At1g07850 837300 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFO S.X. H.G.
0.95 97.0 At1g72960 843627 root hair defective 3 GTP-binding (RHD3) family protein F:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMB S.X. H.G.
0.95 97.0 At3g17720 821040 pyridoxal-dependent decarboxylase family protein F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOM S.X. H.G.
0.95 97.0 At4g11030 826704 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV S.X. H.G.
0.94 96.7 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family S.X. H.G.
0.94 96.7 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV S.X. H.G.
0.94 96.7 At2g16120 816109 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV S.X. H.G.
0.94 96.7 At4g02140 827460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
254.4 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
176.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.7 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
155.6 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
142.9 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
130.1 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
119.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
118.6 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
97.3 99.9 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
93.2 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 4e-50 198 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.02 2e-2 40 At3g26120 822211 TEL1 (TERMINAL EAR1-LIKE 1) Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. C.G. S.X.
0.02 4e-1 36 At3g07970 819988 QRT2 (QUARTET 2) Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. C.G. S.X.
0.01 4e-1 36 At2g24130 816947 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 4e-1 36 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.03 1e+0 34 At4g31790 829307 diphthine synthase, putative (DPH5) F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBP C.G. S.X.
0.02 1e+0 34 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-9 63 Glycine max Gma.2863.1.S1_at CA802892 - - 2e-9 At4g18920 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig16045_at Contig16045 - - 2e+0 At3g07500 far-red impaired responsive family protein / FAR1 family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os01g0728700 AK108000.1 - Conserved hypothetical protein 3e-2 At1g29680 unknown protein C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.37304.1.A1_at CV256961 - - 4e-1 At2g35200 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.50233.1.S1_at CA744099 - - 1e+1 At5g14010 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1619669_at CD008410 - - 3e+0 At3g27329 - C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.831.1.A1_at AI770541 Hypothetical protein LOC100191667 - 2e-1 At1g21900 emp24/gp25L/p24 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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