Gene omics information

Query gene ID At4g18920
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7989.1At4g18920827627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.9597.0At4g10440826636dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAS.X.H.G.
0.9597.0At1g07850837300transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFOS.X.H.G.
0.9597.0At1g72960843627root hair defective 3 GTP-binding (RHD3) family proteinF:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMBS.X.H.G.
0.9597.0At3g17720821040pyridoxal-dependent decarboxylase family proteinF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOMS.X.H.G.
0.9597.0At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVS.X.H.G.
0.9496.7At3g17630821030ATCHX19 (CATION/H+ EXCHANGER 19)member of Putative Na+/H+ antiporter familyS.X.H.G.
0.9496.7At2g07560815329AHA6 (Arabidopsis H(+)-ATPase 6)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVS.X.H.G.
0.9496.7At2g16120816109mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVS.X.H.G.
0.9496.7At4g02140827460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
254.4100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
163.799.9GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
155.699.9GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
142.999.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.699.9GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
97.399.9GSM106912opr3_JA 8hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
93.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.514e-50198At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFC.G.S.X.
0.022e-240At3g26120822211TEL1 (TERMINAL EAR1-LIKE 1)Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.C.G.S.X.
0.024e-136At3g07970819988QRT2 (QUARTET 2)Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.C.G.S.X.
0.014e-136At2g24130816947leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.034e-136At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFC.G.S.X.
0.031e+034At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPC.G.S.X.
0.021e+034At3g01660821098methyltransferaseF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAFC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-963Glycine maxGma.2863.1.S1_atCA802892--2e-9At4g18920unknown proteinC.G.S.X.
0.033e+032Hordeum vulgareContig16045_atContig16045--2e+0At3g07500far-red impaired responsive family protein / FAR1 family proteinC.G.S.X.
0.033e+034Oryza sativaOs01g0728700AK108000.1-Conserved hypothetical protein3e-2At1g29680unknown proteinC.G.S.X.
0.038e+032Populus trichocarpaPtpAffx.37304.1.A1_atCV256961--4e-1At2g35200unknown proteinC.G.S.X.
0.036e+032Triticum aestivumTaAffx.50233.1.S1_atCA744099--1e+1At5g14010zinc finger (C2H2 type) family proteinC.G.S.X.
0.037e+030Vitis vinifera1619669_atCD008410--3e+0At3g27329-C.G.S.X.
0.031e+130Zea maysZmAffx.831.1.A1_atAI770541Hypothetical protein LOC100191667-2e-1At1g21900emp24/gp25L/p24 family proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage