Gene omics information

Query gene ID At4g18880
Gene name AT-HSFA4A
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1912.7At4g18880827622AT-HSFA4Amember of Heat Stress Transcription Factor (Hsf) familyS.X.H.G.
0.4050.8At3g11840820357PUB24 (PLANT U-BOX 24)Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.S.X.H.G.
0.3032.1At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBS.X.H.G.
0.1811.4At1g13210837881ACA.l (autoinhibited Ca2+/ATPase II)F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAS.X.H.G.
0.1710.2At5g06320830520NHL3encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.499.7GSM134369St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
27.899.7GSM134405St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
27.499.7GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
27.199.7GSM134403St.Clair_1-100_268b_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
26.199.7GSM269830T6 leaf-well watered-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
25.699.7GSM134421St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.415e-66252At5g45710834610RHA1 (ROOT HANDEDNESS 1)member of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.053e-1893At3g22830821854AT-HSFA6Bmember of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.097e-1685At4g17750827496HSF1 (HEAT SHOCK FACTOR 1)native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation and is heat-shock inducibleC.G.S.X.
0.063e-963At5g16820831545HSF3 (HEAT SHOCK FACTOR 3)Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.C.G.S.X.
0.086e-756At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.101e-552At4g18870827621heat shock transcription factor family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOC.G.S.X.
0.042e-448At5g54070835493AT-HSFA9A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.201e-30135Glycine maxGmaAffx.81359.1.S1_atBG405291--8e-31At4g18880AT-HSFA4AC.G.S.X.
0.058e-548Hordeum vulgareContig8225_atContig8225--2e-14At5g16820HSF3 (HEAT SHOCK FACTOR 3)C.G.S.X.
0.075e-963Oryza sativaOs01g0749300AY344491.1-Heat shock factor3e-16At4g17750HSF1 (HEAT SHOCK FACTOR 1)C.G.S.X.
0.121e-552Populus trichocarpaPtpAffx.211816.1.S1_s_atpmrna23179hypothetical protein-5e-9At3g02990ATHSFA1EC.G.S.X.
0.043e-654Triticum aestivumTaAffx.95561.1.S1_atCA657041--7e-19At3g22830AT-HSFA6BC.G.S.X.
0.062e-1995Vitis vinifera1610122_atCF517531--4e-24At2g26150ATHSFA2C.G.S.X.
0.054e-652Zea maysZm.2008.1.A1_atCF623731hypothetical protein LOC100279662-8e-8At3g02990ATHSFA1EC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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