Gene omics information

Query gene ID At4g18790
Gene name NRAMP5
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At4g18790827613NRAMP5member of Nramp2 familyS.X.H.G.
0.5065.3At5g42340834240binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBVS.X.H.G.
0.4457.2At3g20200821564protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.4355.3At1g75160843853unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2930.3At1g13890837948SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
194.8100.0E-MEXP-285-raw-cel-440782725
166.6100.0GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
162.499.9E-ATMX-35-raw-cel-1574334880
149.599.9E-ATMX-35-raw-cel-1574334864
140.499.9GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
136.799.9GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
133.399.9E-MEXP-285-raw-cel-440782791
132.899.9E-MEXP-1138-raw-cel-1432773258
128.699.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
126.099.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.234e-27123At2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.231e-1481At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.172e-1067At1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.C.G.S.X.
0.015e-240At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAC.G.S.X.
0.012e-138At2g01570814686RGA1 (REPRESSOR OF GA1-3 1)Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.C.G.S.X.
0.012e-138At1g80830844422NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.C.G.S.X.
0.018e-136At5g23400832405disease resistance family protein / LRR family proteinF:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAVC.G.S.X.
0.018e-136At3g03050821148CSLD3 (CELLULOSE SYNTHASE-LIKE D3)encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide.C.G.S.X.
0.018e-136At2g31320817690PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)Abiotic Stress-inducible gene.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.125e-654Glycine maxGmaAffx.46439.1.S1_atBE806279--5e-25At1g47240NRAMP2C.G.S.X.
0.016e+032Hordeum vulgareHD12A16r_atHD12A16r--7e-2At4g18190ATPUP6C.G.S.X.
0.167e-1583Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.223e-1687Populus trichocarpaPtpAffx.202040.1.S1_atpmrna4065nramp transporter-5e-119At1g47240NRAMP2C.G.S.X.
0.035e-240Triticum aestivumTa.15473.1.S1_atCA484906--2e-2At1g47240NRAMP2C.G.S.X.
0.071e-963Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.024e-446Zea maysZm.13647.1.S1_atAY107242.1metal transporter Nramp3-3e-12At5g67330ATNRAMP4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
NGO:0006875Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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