CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18790

Gene name NRAMP5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At4g18790 827613 NRAMP5 member of Nramp2 family S.X. H.G.
0.50 65.3 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV S.X. H.G.
0.44 57.2 At3g20200 821564 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.43 55.3 At1g75160 843853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At1g13890 837948 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
194.8 100.0 E-MEXP-285-raw-cel-440782725
166.6 100.0 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
162.4 99.9 E-ATMX-35-raw-cel-1574334880
149.5 99.9 E-ATMX-35-raw-cel-1574334864
140.4 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
136.7 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
133.3 99.9 E-MEXP-285-raw-cel-440782791
132.8 99.9 E-MEXP-1138-raw-cel-1432773258
128.6 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
126.0 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-27 123 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. C.G. S.X.
0.23 1e-14 81 At5g67330 836868 ATNRAMP4 Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. C.G. S.X.
0.17 2e-10 67 At1g47240 841127 NRAMP2 Member of the NRAMP2 gene family of metal ion transporters. C.G. S.X.
0.01 5e-2 40 At5g54480 835536 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVA C.G. S.X.
0.01 2e-1 38 At2g01570 814686 RGA1 (REPRESSOR OF GA1-3 1) Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development. C.G. S.X.
0.01 2e-1 38 At1g80830 844422 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. C.G. S.X.
0.01 8e-1 36 At5g23400 832405 disease resistance family protein / LRR family protein F:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAV C.G. S.X.
0.01 8e-1 36 At3g03050 821148 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. C.G. S.X.
0.01 8e-1 36 At2g31320 817690 PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) Abiotic Stress-inducible gene. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-6 54 Glycine max GmaAffx.46439.1.S1_at BE806279 - - 5e-25 At1g47240 NRAMP2 C.G. S.X.
0.01 6e+0 32 Hordeum vulgare HD12A16r_at HD12A16r - - 7e-2 At4g18190 ATPUP6 C.G. S.X.
0.16 7e-15 83 Oryza sativa Os12g0581600 AK071485.1 - Integral membrane protein 7e-8 At1g47240 NRAMP2 C.G. S.X.
0.22 3e-16 87 Populus trichocarpa PtpAffx.202040.1.S1_at pmrna4065 nramp transporter - 5e-119 At1g47240 NRAMP2 C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.15473.1.S1_at CA484906 - - 2e-2 At1g47240 NRAMP2 C.G. S.X.
0.07 1e-9 63 Vitis vinifera 1617338_at BQ793025 hypothetical protein LOC100262579 - 2e-22 At1g47240 NRAMP2 C.G. S.X.
0.02 4e-4 46 Zea mays Zm.13647.1.S1_at AY107242.1 metal transporter Nramp3 - 3e-12 At5g67330 ATNRAMP4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
N GO:0006875 Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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