CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18650

Gene name transcription factor-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g18650 827599 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.90 95.1 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.90 95.1 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At2g19320 816449 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.89 94.6 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.87 93.5 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.87 93.5 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.86 93.1 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.86 93.1 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
402.7 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
350.1 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
334.5 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
333.9 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
324.7 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
306.9 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
296.4 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
271.9 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
226.6 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
190.2 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO C.G. S.X.
0.01 9e-2 38 At1g61400 842434 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 3e-1 36 At4g15096 827175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPB C.G. S.X.
0.01 3e-1 36 At1g12040 837756 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. C.G. S.X.
0.01 1e+0 34 At5g04290 830308 KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1) F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.01 1e+0 34 At4g22300 828325 SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis C.G. S.X.
0.02 1e+0 34 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.03 1e+0 34 At3g53120 824478 VPS37-1 F:unknown;P:unknown;C:ESCRT I complex;MOPFB C.G. S.X.
0.02 1e+0 34 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Glycine max GmaAffx.70076.1.S1_at BU964854 - - 1e-6 At1g32260 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig5530_s_at Contig5530 - - 2e+0 At1g13370 histone H3, putative C.G. S.X.
0.02 3e+0 34 Oryza sativa Os07g0413632 NM_188154.1 - - 4e-1 At4g01580 transcriptional factor B3 family protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.200482.1.S1_at pmrna972 hypothetical protein - 5e-2 At1g02405 proline-rich family protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.92806.1.A1_at BJ252530 - - 3e-1 At4g18650 transcription factor-related C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1616657_at CB982498 hypothetical protein LOC100241809 - 9e-36 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.03 6e-1 34 Zea mays Zm.13589.1.A1_at AY107793.1 - - 1e+0 At3g04920 40S ribosomal protein S24 (RPS24A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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