Gene omics information

Query gene ID At4g18610
Gene name LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At4g18610827595LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMS.X.H.G.
0.4659.8At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOS.X.H.G.
0.4659.8At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVS.X.H.G.
0.4355.3At5g25890832658IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.S.X.H.G.
0.3541.6At3g16340820881PDR1F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPVS.X.H.G.
0.3541.6At2g37280818305PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVS.X.H.G.
0.3338.1At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseS.X.H.G.
0.3133.8At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sS.X.H.G.
0.2217.5At3g61850825358DAG1 (dof affecting germination 1)Zinc finger transcription factor of the Dof family involved in the control of seed germination.S.X.H.G.
0.146.8At3g17420821006GPK1serine/threonine protein kinase-like proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
120.599.9GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
105.099.9GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
88.499.9GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
80.899.9GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
75.799.9GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
75.499.9GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
74.999.9GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
73.699.9GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
62.499.8GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
59.499.8GSM142639MC002_ATH1_A6.2-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.206e-21101At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.215e-1581At1g16910838262LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.215e-1271At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
0.175e-1271At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMC.G.S.X.
0.278e-1167At1g07090837220LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.061e-344At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMC.G.S.X.
0.072e-240At2g31160817672LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
0.027e-238At3g61680825341lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-446Glycine maxGmaAffx.28870.1.S1_atBG726532--6e-9At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)C.G.S.X.
0.041e-136Hordeum vulgareContig23792_atContig23792--3e-1At1g31060unknown proteinC.G.S.X.
0.051e-138Oryza sativaOsAffx.26447.1.A1_x_at---0C.G.S.X.
0.136e-342Populus trichocarpaPtpAffx.2712.1.S1_atCV261324hypothetical protein-4e-5At1g07090LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)C.G.S.X.
0.072e-859Triticum aestivumTaAffx.100979.1.S1_s_atBQ609313--7e-2At5g58500LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)C.G.S.X.
0.172e-857Vitis vinifera1612785_atCF515439hypothetical protein LOC100254926-6e-31At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)C.G.S.X.
0.032e+032Zea maysZmAffx.1002.1.A1_atAI881341--2e-1At1g04445zinc finger (C2H2 type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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