CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18290

Gene name KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. S.X. H.G.
0.87 93.5 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P S.X. H.G.
0.86 93.1 At3g17070 820964 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.81 90.4 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. S.X. H.G.
0.76 87.4 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF S.X. H.G.
0.75 86.9 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.74 86.1 At3g51760 824339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.70 83.5 At3g24140 822000 FMA (FAMA) Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. S.X. H.G.
0.70 83.5 At1g78530 844189 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At1g04800 839406 glycine-rich protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
408.5 100.0 E-MEXP-1443-raw-cel-1581869515
212.4 100.0 E-MEXP-1443-raw-cel-1581869803
204.2 100.0 E-MEXP-1443-raw-cel-1581869573
198.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
182.6 100.0 E-MEXP-1443-raw-cel-1581869745
163.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
155.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
152.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
149.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 0 1215 At5g46240 834666 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface. C.G. S.X.
0.03 2e-5 52 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. C.G. S.X.
0.02 7e-5 50 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.02 3e-4 48 At2g25600 817099 SPIK (Shaker Pollen Inward K+ channel) mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.01 7e-2 40 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF C.G. S.X.
0.02 3e-1 38 At3g06140 819787 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBA C.G. S.X.
0.01 3e-1 38 At2g27190 817261 PAP12 (PURPLE ACID PHOSPHATASE 12) secreted purple acid phosphatase precursor C.G. S.X.
0.01 3e-1 38 At1g30410 839921 ATMRP13 member of MRP subfamily C.G. S.X.
0.01 3e-1 38 At1g61080 842400 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 46 Glycine max GmaAffx.58721.1.S1_at BF423813 - - 3e-4 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.05 2e-9 63 Hordeum vulgare Y09748_at Y09748 potassium channel - 3e-11 At5g46240 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) C.G. S.X.
0.14 3e-21 105 Oryza sativa Os.33370.1.S1_at - - - 0 C.G. S.X.
0.39 1e-44 182 Populus trichocarpa Ptp.120.1.S1_at AJ344623.1 hypothetical protein - 8e-45 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.04 1e-3 46 Triticum aestivum Ta.25300.1.A1_at CD454850 - - 6e-4 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.35 7e-67 254 Vitis vinifera 1619157_at AF359521.1 inward rectifying shaker-like K+ channel - 3e-66 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.11 1e-19 97 Zea mays Zm.9559.1.S1_at AY461584.1 inward rectifying shaker K+ channel - 6e-21 At5g46240 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0007623 Any biological process in an organism that recurs with a regularity of approximately 24 hours.
X GO:0009644 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
X GO:0010118 The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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