CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18250

Gene name receptor serine/threonine kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At4g18250 827551 receptor serine/threonine kinase, putative F:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.40 50.8 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.10 3.4 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV S.X. H.G.
0.08 2.3 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
0.04 0.9 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
335.3 100.0 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
120.1 99.9 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
119.5 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.0 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
101.1 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
75.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
73.8 99.9 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
73.4 99.9 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
64.8 99.8 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
60.5 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 2e-153 543 At1g70250 843361 receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.36 2e-107 391 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase C.G. S.X.
0.12 6e-12 73 At1g66910 843009 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.11 9e-8 59 At1g66920 843010 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.10 3e-7 57 At5g38260 833808 serine/threonine protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 1e-6 56 At5g38250 833807 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 1e-6 56 At5g38240 833806 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 1e-6 56 At1g66980 843016 protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVA C.G. S.X.
0.07 2e-5 52 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-6 54 Glycine max GmaAffx.84794.1.S1_at AW396424 - - 2e-1 At2g31725 unknown protein C.G. S.X.
0.03 7e-7 56 Hordeum vulgare Contig21786_at Contig21786 - - 3e-7 At5g38250 serine/threonine protein kinase, putative C.G. S.X.
0.04 4e-2 42 Oryza sativa Os01g0113500 AK106707.1 - Protein kinase domain containing protein 1e+0 At5g51451 unknown protein C.G. S.X.
0.15 1e-7 59 Populus trichocarpa PtpAffx.225173.1.S1_at pmrna44320 hypothetical protein - 6e-8 At4g18250 receptor serine/threonine kinase, putative C.G. S.X.
0.04 2e-5 52 Triticum aestivum Ta.12007.2.S1_at BG907089 - - 2e-6 At4g18250 receptor serine/threonine kinase, putative C.G. S.X.
0.02 6e-3 42 Vitis vinifera 1610386_at CF404528 hypothetical protein LOC100263755 /// hypothetical protein LOC100242248 /// hypothetical protein LOC100245376 /// hypothetical protein LOC100251011 /// hypothetical protein LOC100262350 /// hypothetical protein LOC100262818 /// hypothetical protein LOC100263363 /// hypothetical protein LOC100265356 - 4e-3 At3g24790 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase C.G. S.X.
0.01 2e+0 34 Zea mays Zm.9768.1.A1_at BM338514 hypothetical protein LOC100273687 - 3e-2 At1g29730 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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