Gene omics information

Query gene ID At4g18240
Gene name ATSS4
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g18240827550ATSS4F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAVS.X.H.G.
0.6781.6At5g26570832706ATGWD3chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.S.X.H.G.
0.5368.6At1g69830843319AMY3 (ALPHA-AMYLASE-LIKE 3)Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.S.X.H.G.
0.5065.3At3g29320822590glucan phosphorylase, putativeEncodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.S.X.H.G.
0.3235.7At3g47860823942apolipoprotein D-relatedF:transporter activity, binding;P:transport;C:chloroplast thylakoid membrane, chloroplast;MPOBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM131154AtGen_C-4_1-C-12_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
11.899.3GSM131463AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)
10.999.2GSM131251AtGen_6-0511_Control-Shoots-12.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
10.499.2GSM128670Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.799.1GSM131252AtGen_6-0512_Control-Shoots-12.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)
9.699.1GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
9.599.1GSM131464AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-140At5g60940836215transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.011e-140At1g17880838367nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeF:transcription factor activity;P:response to salt stress;C:cellular_component unknown;MFPOC.G.S.X.
0.011e-140At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.C.G.S.X.
0.012e+036At5g55730835667FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1)fasciclin-like arabinogalactan-protein 1 (Fla1)C.G.S.X.
0.012e+036At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.012e+036At3g54280824595RGD3 (ROOT GROWTH DEFECTIVE 3)F:binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAC.G.S.X.
0.012e+036At3g28980822538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGmaAffx.82968.1.S1_atBM891726--1e-26At1g11720ATSS3 (starch synthase 3)C.G.S.X.
0.043e-963Hordeum vulgareContig13138_atContig13138--2e-9At4g18240ATSS4C.G.S.X.
0.111e-1483Oryza sativaOs01g0720600AY373257.1-Spectrin repeat containing protein9e-15At4g18240ATSS4C.G.S.X.
0.319e-77289Populus trichocarpaPtpAffx.200931.1.S1_atpmrna1834hypothetical protein-5e-77At4g18240ATSS4C.G.S.X.
0.094e-757Triticum aestivumTa.2766.1.S1_atAY044844.1starch synthase isoform IV-5e-7At4g18240ATSS4C.G.S.X.
0.012e+034Vitis vinifera1607724_atCF510892--1e+0At4g01420CBL5 (CALCINEURIN B-LIKE PROTEIN 5)C.G.S.X.
0.013e+034Zea maysZm.18040.1.A1_atBE186254--4e-1At1g35780unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0005982The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00359Link to KaPPA-View 4Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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