CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g18090

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At4g18090 827534 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP S.X. H.G.
0.69 82.9 At4g11590 826764 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.65 79.6 At1g43680 840955 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At2g34880 818053 MEE27 (maternal effect embryo arrest 27) F:transcription factor activity;P:embryonic development ending in seed dormancy, pollen development, regulation of transcription;C:nucleus;MFPO S.X. H.G.
0.61 76.7 At2g32310 817792 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.55 70.6 At3g20850 821633 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA S.X. H.G.
0.52 67.4 At3g29380 822598 transcription factor IIB (TFIIB) family protein F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:response to cadmium ion;C:transcription factor complex, nucleus;OAMFPV S.X. H.G.
0.50 65.3 At1g46840 841118 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P S.X. H.G.
0.48 62.5 At2g37910 818367 cation/hydrogen exchanger, putative (CHX21) F:monovalent cation:proton antiporter activity;P:cation transport;C:endomembrane system;P S.X. H.G.
0.44 57.2 At3g58280 824997 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
390.1 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
348.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
324.3 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
294.4 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
267.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
252.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
245.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
241.1 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
199.1 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 36 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO C.G. S.X.
0.02 4e-1 36 At2g19220 816439 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.02 4e-1 36 At1g13220 837882 LINC2 (LITTLE NUCLEI2) Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. C.G. S.X.
0.01 2e+0 34 At5g52882 5008305 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 2e+0 34 At5g13530 831197 KEG (KEEP ON GOING) Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. C.G. S.X.
0.01 2e+0 34 At5g49840 835047 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding F:protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein transport;C:unknown;BOMFPA C.G. S.X.
0.02 2e+0 34 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV C.G. S.X.
0.01 2e+0 34 At5g18510 831969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.38147.1.S1_at BU926370 - - 2e-1 At4g18090 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig26201_at Contig26201 - - 1e+0 At4g18090 unknown protein C.G. S.X.
0.03 8e-1 36 Oryza sativa OsAffx.17770.1.S1_x_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.202642.1.S1_at pmrna5281 hypothetical protein - 2e-1 At4g18090 unknown protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.128896.16.A1_at CA671303 - - 2e-23 Atcg00780 - C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1619548_at CF209981 - - 1e+0 At4g18090 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.767.1.A1_at AI746090 hypothetical protein LOC100273842 - 3e+0 At4g18090 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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