CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17970

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.90 95.1 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. S.X. H.G.
0.84 91.9 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P S.X. H.G.
0.78 88.6 At5g18430 831961 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.76 87.4 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF S.X. H.G.
0.76 87.4 At3g24140 822000 FMA (FAMA) Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. S.X. H.G.
0.75 86.9 At3g62820 825457 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At4g14480 827095 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.72 84.8 At1g04800 839406 glycine-rich protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVA S.X. H.G.
0.71 84.2 At2g21080 816643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1007.2 100.0 E-MEXP-1443-raw-cel-1581869573
818.4 100.0 E-MEXP-1443-raw-cel-1581869515
73.5 99.9 GSM74904 ice1_3H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
73.0 99.9 GSM74903 ice1_no treatment_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
68.4 99.9 GSM74907 ice1_6H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
56.6 99.8 E-MEXP-1443-raw-cel-1581869803
56.4 99.8 GSM74905 ice1_3H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
55.4 99.8 GSM156790 control rep1 GSE6788 Expression data of an albino mutant DS 13-2198-1
44.0 99.8 E-MEXP-1443-raw-cel-1581869745
35.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 2e-124 446 At5g46610 834704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO C.G. S.X.
0.23 3e-111 402 At4g17585 827476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.54 9e-47 188 At5g46600 834703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.01 5e-2 40 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM C.G. S.X.
0.01 2e-1 38 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. C.G. S.X.
0.01 2e-1 38 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 2e-1 38 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 40 Glycine max GmaAffx.20688.2.S1_at AI959836 - - 2e-9 At4g36830 GNS1/SUR4 membrane family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HV_CEa0014A11r2_x_at HV_CEa0014A11r2 - - 2e+0 At3g56010 unknown protein C.G. S.X.
0.03 4e-4 48 Oryza sativa Os04g0567200 AK110383.1 - Protein of unknown function UPF0005 family protein 3e-4 At4g17970 unknown protein C.G. S.X.
0.18 2e-14 81 Populus trichocarpa PtpAffx.220041.1.S1_at pmrna36305 hypothetical protein - 1e-14 At4g17970 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.6631.2.S1_a_at BJ309115 - - 1e+0 At5g38320 unknown protein C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1614786_at BQ792554 - - 7e-8 At4g33170 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 9e-2 38 Zea mays Zm.9638.1.S1_at BM332555 - - 4e-1 At5g57655 xylose isomerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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