Gene omics information

Query gene ID At4g17950
Gene name DNA-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3745.0At4g17950827520DNA-binding family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVS.X.H.G.
0.7083.5At5g44180834441homeobox transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVAS.X.H.G.
0.6579.6At3g29310822589calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVS.X.H.G.
0.6176.7At2g06210815177ELF8 (EARLY FLOWERING 8)Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.S.X.H.G.
0.5673.0At1g68790843210LINC3 (LITTLE NUCLEI3)F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAVS.X.H.G.
0.5267.4At5g47690834820bindingF:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVAS.X.H.G.
0.5166.3At5g04290830308KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1)F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAS.X.H.G.
0.5065.3At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVS.X.H.G.
0.4862.5At5g55660835660-F:unknown;P:unknown;C:mitochondrion;MOFBPVAS.X.H.G.
0.4457.2At2g29210817470splicing factor PWI domain-containing proteinF:unknown;P:RNA splicing;C:unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
188.5100.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
146.699.9GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
86.799.9GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
79.999.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
72.699.9GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
72.299.9GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
64.899.8GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
52.699.8GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
51.499.8GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
49.799.8GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.369e-28125At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFC.G.S.X.
0.013e-344At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.C.G.S.X.
0.013e-344At2g33170817878leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.023e-344At1g06070837116bZIP transcription factor, putative (bZIP69)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVAC.G.S.X.
0.021e-242At3g08670820014unknown proteinF:unknown;P:response to oxidative stress;C:unknown;MFOBPVAC.G.S.X.
0.021e-242At2g22490816782CYCD2encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A.C.G.S.X.
0.021e-242At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-344Glycine maxGmaAffx.73797.1.S1_atBU927162--1e-3At4g17950DNA-binding family proteinC.G.S.X.
0.033e-136Hordeum vulgareContig21455_atContig21455--1e-11At3g1009040S ribosomal protein S28 (RPS28A)C.G.S.X.
0.029e-859Oryza sativaOs10g0572900AK102506.1-Protein of unknown function DUF296 domaincontaining protein7e-8At4g17950DNA-binding family proteinC.G.S.X.
0.041e-1275Populus trichocarpaPtp.262.1.S1_atCN523158--2e-13At5g46640DNA-binding family proteinC.G.S.X.
0.032e-448Triticum aestivumTaAffx.57545.1.S1_atCA627253--7e-16At3g0711060S ribosomal protein L13A (RPL13aA)C.G.S.X.
0.021e-240Vitis vinifera1613372_atCF514636similar to P-glycoprotein-2e-5At1g06070bZIP transcription factor, putative (bZIP69)C.G.S.X.
0.027e-238Zea maysZm.9422.1.A1_atBM268752hypothetical protein LOC100279301-7e-2At5g07600oleosin / glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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