CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17940

Gene name binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g17940 827519 binding F:binding;P:biological_process unknown;C:unknown;PBOMA S.X. H.G.
0.33 38.1 At4g30600 829183 signal recognition particle receptor alpha subunit family protein F:in 6 functions;P:intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting;BOMFAPV S.X. H.G.
0.33 38.1 At5g01710 831693 - F:unknown;P:unknown;C:endomembrane system;POMB S.X. H.G.
0.06 1.4 At1g77770 844114 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO S.X. H.G.
0.03 0.6 At2g37110 818287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO S.X. H.G.
0.01 0.2 At1g69030 843235 - F:unknown;P:biological_process unknown;C:unknown;PMOFAB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.4 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
109.2 99.9 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
105.6 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
75.5 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
65.9 99.8 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
62.4 99.8 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
55.0 99.8 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
48.6 99.8 E-MEXP-1443-raw-cel-1581869745
47.1 99.8 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
45.3 99.8 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.01 1e-1 38 At4g28570 828975 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:endoplasmic reticulum;BOFPMA C.G. S.X.
0.03 4e-1 36 At5g30495 833073 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.02 4e-1 36 At4g01985 2745601 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.02 4e-1 36 At4g31630 829291 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFMBV C.G. S.X.
0.01 4e-1 36 At2g18480 816363 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV C.G. S.X.
0.02 4e-1 36 At1g04770 839418 male sterility MS5 family protein F:binding;P:biological_process unknown;C:unknown;POB C.G. S.X.
0.01 4e-1 36 At1g74580 843798 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-3 42 Glycine max GmaAffx.23350.1.S1_at AW706133 - - 2e-3 At4g17940 binding C.G. S.X.
0.03 2e-1 36 Hordeum vulgare EBpi01_SQ002_P23_at EBpi01_SQ002_P23 - - 2e-1 At4g15650 protein kinase-related C.G. S.X.
0.04 5e-2 40 Oryza sativa OsAffx.23470.1.S1_at - - - 0 C.G. S.X.
0.10 3e-18 93 Populus trichocarpa PtpAffx.17330.1.S1_at CV243084 hypothetical protein - 2e-19 At4g17940 binding C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.57191.1.S1_at CA634803 - - 2e-1 At4g31580 SRZ-22 C.G. S.X.
0.04 3e-2 38 Vitis vinifera 1609989_at CF415187 - - 2e+1 At4g08190 Ras-related GTP-binding protein, putative C.G. S.X.
0.02 7e-1 34 Zea mays Zm.4917.1.A1_at CK347849 - - 3e-9 At3g11730 ATFP8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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